Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3244

Experiment: LB_plus_SM_buffer with Br60_phage 0.0005 MOI

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF3242 and GFF3243 overlap by 4 nucleotidesGFF3243 and GFF3244 overlap by 46 nucleotidesGFF3244 and GFF3245 are separated by 430 nucleotides GFF3242 - Paraquat-inducible protein B, at 17,051 to 18,691 GFF3242 GFF3243 - Paraquat-inducible protein B, at 18,688 to 19,251 GFF3243 GFF3244 - hypothetical protein, at 19,206 to 19,343 GFF3244 GFF3245 - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase, FabA form (EC 4.2.1.59), at 19,774 to 20,292 GFF3245 Position (kb) 19 20Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 18.260 kb on + strand, within GFF3242at 18.398 kb on - strand, within GFF3242at 18.398 kb on - strand, within GFF3242at 18.430 kb on + strand, within GFF3242at 18.430 kb on + strand, within GFF3242at 18.431 kb on - strand, within GFF3242at 18.442 kb on + strand, within GFF3242at 18.542 kb on + strandat 18.543 kb on - strandat 18.656 kb on - strandat 18.760 kb on + strand, within GFF3243at 18.763 kb on + strand, within GFF3243at 18.824 kb on + strand, within GFF3243at 18.824 kb on + strand, within GFF3243at 18.845 kb on + strand, within GFF3243at 18.853 kb on + strand, within GFF3243at 18.898 kb on + strand, within GFF3243at 18.899 kb on - strand, within GFF3243at 19.168 kb on + strand, within GFF3243at 19.261 kb on - strand, within GFF3244at 19.261 kb on - strand, within GFF3244at 19.368 kb on + strandat 19.430 kb on + strandat 19.490 kb on + strandat 19.555 kb on + strandat 19.761 kb on - strandat 20.331 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with Br60_phage 0.0005 MOI
remove
18,260 + GFF3242 0.74 +1.3
18,398 - GFF3242 0.82 -0.5
18,398 - GFF3242 0.82 +0.5
18,430 + GFF3242 0.84 +1.0
18,430 + GFF3242 0.84 -1.5
18,431 - GFF3242 0.84 +0.9
18,442 + GFF3242 0.85 -0.2
18,542 + +6.2
18,543 - +0.7
18,656 - -0.8
18,760 + GFF3243 0.13 +0.1
18,763 + GFF3243 0.13 +0.8
18,824 + GFF3243 0.24 -2.8
18,824 + GFF3243 0.24 -0.7
18,845 + GFF3243 0.28 +0.7
18,853 + GFF3243 0.29 -0.5
18,898 + GFF3243 0.37 +0.1
18,899 - GFF3243 0.37 -0.7
19,168 + GFF3243 0.85 +0.5
19,261 - GFF3244 0.40 +0.4
19,261 - GFF3244 0.40 -0.4
19,368 + +0.6
19,430 + +0.8
19,490 + -0.3
19,555 + -0.8
19,761 - -0.2
20,331 - +0.0

Or see this region's nucleotide sequence