Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2964

Experiment: LB_plus_SM_buffer with Br60_phage 0.0005 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2962 and GFF2963 overlap by 4 nucleotidesGFF2963 and GFF2964 are separated by 46 nucleotidesGFF2964 and GFF2965 are separated by 115 nucleotides GFF2962 - N-acetylmannosamine kinase (EC 2.7.1.60), at 46,381 to 47,256 GFF2962 GFF2963 - N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9), at 47,253 to 47,942 GFF2963 GFF2964 - Sialic acid transporter (permease) NanT, at 47,989 to 49,479 GFF2964 GFF2965 - N-acetylneuraminate lyase (EC 4.1.3.3), at 49,595 to 50,488 GFF2965 Position (kb) 47 48 49 50Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7 8 9 10at 47.074 kb on + strand, within GFF2962at 47.224 kb on - strandat 47.250 kb on + strandat 47.251 kb on - strandat 47.251 kb on - strandat 47.382 kb on - strand, within GFF2963at 47.382 kb on - strand, within GFF2963at 47.383 kb on + strand, within GFF2963at 47.474 kb on - strand, within GFF2963at 47.671 kb on - strand, within GFF2963at 47.779 kb on - strand, within GFF2963at 47.789 kb on + strand, within GFF2963at 47.790 kb on - strand, within GFF2963at 47.912 kb on + strandat 47.934 kb on + strandat 47.935 kb on - strandat 47.943 kb on - strandat 47.943 kb on - strandat 47.946 kb on - strandat 47.946 kb on - strandat 47.960 kb on - strandat 47.960 kb on - strandat 48.106 kb on + strandat 48.106 kb on + strandat 48.120 kb on + strandat 48.132 kb on + strandat 48.256 kb on - strand, within GFF2964at 48.257 kb on + strand, within GFF2964at 48.257 kb on + strand, within GFF2964at 48.262 kb on - strand, within GFF2964at 48.300 kb on - strand, within GFF2964at 48.450 kb on - strand, within GFF2964at 48.450 kb on - strand, within GFF2964at 48.578 kb on + strand, within GFF2964at 48.579 kb on - strand, within GFF2964at 48.587 kb on - strand, within GFF2964at 48.589 kb on + strand, within GFF2964at 48.612 kb on - strand, within GFF2964at 48.712 kb on + strand, within GFF2964at 48.846 kb on + strand, within GFF2964at 48.847 kb on - strand, within GFF2964at 48.847 kb on - strand, within GFF2964at 49.085 kb on + strand, within GFF2964at 49.086 kb on - strand, within GFF2964at 49.474 kb on - strandat 49.482 kb on + strandat 49.589 kb on - strandat 49.676 kb on - strandat 49.676 kb on - strandat 49.706 kb on - strand, within GFF2965at 49.818 kb on - strand, within GFF2965at 49.860 kb on + strand, within GFF2965at 49.861 kb on - strand, within GFF2965at 49.861 kb on - strand, within GFF2965at 49.930 kb on - strand, within GFF2965at 49.930 kb on - strand, within GFF2965at 50.030 kb on - strand, within GFF2965at 50.054 kb on + strand, within GFF2965at 50.079 kb on + strand, within GFF2965at 50.079 kb on + strand, within GFF2965at 50.080 kb on - strand, within GFF2965at 50.160 kb on + strand, within GFF2965at 50.161 kb on - strand, within GFF2965at 50.197 kb on - strand, within GFF2965at 50.361 kb on + strand, within GFF2965at 50.362 kb on - strand, within GFF2965

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with Br60_phage 0.0005 MOI
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47,074 + GFF2962 0.79 -0.7
47,224 - +1.1
47,250 + +0.3
47,251 - -1.0
47,251 - -0.8
47,382 - GFF2963 0.19 -1.6
47,382 - GFF2963 0.19 +0.3
47,383 + GFF2963 0.19 +1.0
47,474 - GFF2963 0.32 +0.8
47,671 - GFF2963 0.61 -0.7
47,779 - GFF2963 0.76 -0.2
47,789 + GFF2963 0.78 +1.0
47,790 - GFF2963 0.78 -1.0
47,912 + -0.4
47,934 + -0.2
47,935 - -0.1
47,943 - -0.7
47,943 - -0.6
47,946 - -0.0
47,946 - -0.4
47,960 - +0.3
47,960 - -0.3
48,106 + +1.0
48,106 + -2.1
48,120 + +10.5
48,132 + +5.1
48,256 - GFF2964 0.18 +6.5
48,257 + GFF2964 0.18 +0.7
48,257 + GFF2964 0.18 -1.7
48,262 - GFF2964 0.18 +0.2
48,300 - GFF2964 0.21 +0.3
48,450 - GFF2964 0.31 -0.2
48,450 - GFF2964 0.31 +0.2
48,578 + GFF2964 0.40 +0.0
48,579 - GFF2964 0.40 -0.0
48,587 - GFF2964 0.40 +0.2
48,589 + GFF2964 0.40 -0.2
48,612 - GFF2964 0.42 -0.1
48,712 + GFF2964 0.48 -0.5
48,846 + GFF2964 0.57 -0.6
48,847 - GFF2964 0.58 -0.4
48,847 - GFF2964 0.58 +1.5
49,085 + GFF2964 0.74 +0.0
49,086 - GFF2964 0.74 -1.2
49,474 - +0.4
49,482 + +0.3
49,589 - +0.4
49,676 - -0.7
49,676 - +1.0
49,706 - GFF2965 0.12 -1.5
49,818 - GFF2965 0.25 +0.3
49,860 + GFF2965 0.30 +0.4
49,861 - GFF2965 0.30 +1.3
49,861 - GFF2965 0.30 +0.8
49,930 - GFF2965 0.37 +1.7
49,930 - GFF2965 0.37 +0.5
50,030 - GFF2965 0.49 +0.1
50,054 + GFF2965 0.51 +1.7
50,079 + GFF2965 0.54 +0.8
50,079 + GFF2965 0.54 -0.1
50,080 - GFF2965 0.54 +0.5
50,160 + GFF2965 0.63 -0.0
50,161 - GFF2965 0.63 -0.4
50,197 - GFF2965 0.67 +0.4
50,361 + GFF2965 0.86 -1.9
50,362 - GFF2965 0.86 +0.4

Or see this region's nucleotide sequence