Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2530

Experiment: LB_plus_SM_buffer with Br60_phage 0.0005 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2529 and GFF2530 overlap by 26 nucleotidesGFF2530 and GFF2531 are separated by 176 nucleotides GFF2529 - L-galactonate dehydrogenase (EC 1.1.1.-), at 42,937 to 43,962 GFF2529 GFF2530 - putative transport protein, at 43,937 to 45,223 GFF2530 GFF2531 - FIG01046411: hypothetical protein, at 45,400 to 46,890 GFF2531 Position (kb) 43 44 45 46Strain fitness (log2 ratio) -2 -1 0 1at 42.954 kb on + strandat 43.071 kb on + strand, within GFF2529at 43.133 kb on + strand, within GFF2529at 43.134 kb on - strand, within GFF2529at 43.255 kb on + strand, within GFF2529at 43.334 kb on + strand, within GFF2529at 43.334 kb on + strand, within GFF2529at 43.358 kb on + strand, within GFF2529at 43.467 kb on - strand, within GFF2529at 43.467 kb on - strand, within GFF2529at 44.047 kb on - strandat 44.148 kb on - strand, within GFF2530at 44.503 kb on - strand, within GFF2530at 44.557 kb on - strand, within GFF2530at 44.677 kb on + strand, within GFF2530at 44.693 kb on + strand, within GFF2530at 44.967 kb on - strand, within GFF2530at 45.485 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with Br60_phage 0.0005 MOI
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42,954 + -0.3
43,071 + GFF2529 0.13 +0.5
43,133 + GFF2529 0.19 +1.0
43,134 - GFF2529 0.19 +0.5
43,255 + GFF2529 0.31 +0.4
43,334 + GFF2529 0.39 +0.3
43,334 + GFF2529 0.39 -0.2
43,358 + GFF2529 0.41 -1.8
43,467 - GFF2529 0.52 +1.2
43,467 - GFF2529 0.52 +0.8
44,047 - -0.0
44,148 - GFF2530 0.16 +0.5
44,503 - GFF2530 0.44 -1.7
44,557 - GFF2530 0.48 +0.5
44,677 + GFF2530 0.57 -0.0
44,693 + GFF2530 0.59 -0.6
44,967 - GFF2530 0.80 +0.6
45,485 + -0.2

Or see this region's nucleotide sequence