Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2430

Experiment: LB_plus_SM_buffer with Br60_phage 0.0005 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2428 and GFF2429 are separated by 246 nucleotidesGFF2429 and GFF2430 are separated by 11 nucleotidesGFF2430 and GFF2431 are separated by 1 nucleotides GFF2428 - Peptidase B (EC 3.4.11.23), at 44,602 to 45,885 GFF2428 GFF2429 - Believed to be involved in assembly of Fe-S clusters, at 46,132 to 46,332 GFF2429 GFF2430 - Ferredoxin, 2Fe-2S, at 46,344 to 46,679 GFF2430 GFF2431 - Chaperone protein HscA, at 46,681 to 48,531 GFF2431 Position (kb) 46 47Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7at 45.416 kb on + strand, within GFF2428at 45.544 kb on - strand, within GFF2428at 45.793 kb on - strandat 45.793 kb on - strandat 45.815 kb on + strandat 45.944 kb on - strandat 46.063 kb on + strandat 46.071 kb on + strandat 46.071 kb on + strandat 46.071 kb on + strandat 46.287 kb on - strand, within GFF2429at 46.332 kb on + strandat 46.336 kb on - strandat 46.516 kb on - strand, within GFF2430at 46.769 kb on - strandat 46.951 kb on - strand, within GFF2431at 47.631 kb on + strand, within GFF2431

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with Br60_phage 0.0005 MOI
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45,416 + GFF2428 0.63 -0.4
45,544 - GFF2428 0.73 +0.6
45,793 - +7.0
45,793 - +2.4
45,815 + +0.2
45,944 - +0.0
46,063 + +0.3
46,071 + +0.0
46,071 + +0.2
46,071 + -0.3
46,287 - GFF2429 0.77 -0.6
46,332 + -1.0
46,336 - -1.0
46,516 - GFF2430 0.51 -3.1
46,769 - -2.4
46,951 - GFF2431 0.15 +0.7
47,631 + GFF2431 0.51 -3.0

Or see this region's nucleotide sequence