Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1201

Experiment: LB_plus_SM_buffer with Br60_phage 0.0005 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1198 and GFF1199 are separated by 93 nucleotidesGFF1199 and GFF1200 are separated by 53 nucleotidesGFF1200 and GFF1201 are separated by 89 nucleotidesGFF1201 and GFF1202 are separated by 50 nucleotidesGFF1202 and GFF1203 overlap by 11 nucleotidesGFF1203 and GFF1204 are separated by 43 nucleotidesGFF1204 and GFF1205 overlap by 35 nucleotides GFF1198 - Porin thermoregulatory protein envY, at 44,190 to 44,948 GFF1198 GFF1199 - hypothetical protein, at 45,042 to 45,161 GFF1199 GFF1200 - Attachment invasion locus protein precursor, at 45,215 to 45,772 GFF1200 GFF1201 - Outer membrane protein assembly factor YaeT precursor, at 45,862 to 46,707 GFF1201 GFF1202 - hypothetical protein, at 46,758 to 46,904 GFF1202 GFF1203 - Thiol:disulfide interchange protein dsbA precursor, at 46,894 to 47,547 GFF1203 GFF1204 - hypothetical protein, at 47,591 to 47,704 GFF1204 GFF1205 - hypothetical protein, at 47,670 to 47,813 GFF1205 Position (kb) 45 46 47Strain fitness (log2 ratio) -2 -1 0 1 2 3at 44.932 kb on + strandat 44.950 kb on - strandat 44.952 kb on + strandat 44.989 kb on + strandat 44.989 kb on + strandat 44.990 kb on - strandat 45.049 kb on + strandat 45.049 kb on + strandat 45.050 kb on - strandat 45.073 kb on + strand, within GFF1199at 45.074 kb on - strand, within GFF1199at 45.074 kb on - strand, within GFF1199at 45.148 kb on - strand, within GFF1199at 45.148 kb on - strand, within GFF1199at 45.161 kb on + strandat 45.271 kb on + strand, within GFF1200at 45.272 kb on - strand, within GFF1200at 45.282 kb on + strand, within GFF1200at 45.316 kb on + strand, within GFF1200at 45.323 kb on + strand, within GFF1200at 45.382 kb on - strand, within GFF1200at 45.444 kb on + strand, within GFF1200at 45.445 kb on - strand, within GFF1200at 45.452 kb on + strand, within GFF1200at 45.453 kb on - strand, within GFF1200at 45.621 kb on + strand, within GFF1200at 45.622 kb on - strand, within GFF1200at 45.649 kb on + strand, within GFF1200at 45.650 kb on - strand, within GFF1200at 45.795 kb on + strandat 45.795 kb on + strandat 45.795 kb on + strandat 46.060 kb on + strand, within GFF1201at 46.060 kb on + strand, within GFF1201at 46.060 kb on + strand, within GFF1201at 46.061 kb on - strand, within GFF1201at 46.064 kb on + strand, within GFF1201at 46.064 kb on + strand, within GFF1201at 46.064 kb on + strand, within GFF1201at 46.064 kb on + strand, within GFF1201at 46.065 kb on - strand, within GFF1201at 46.065 kb on - strand, within GFF1201at 46.065 kb on - strand, within GFF1201at 46.065 kb on - strand, within GFF1201at 46.104 kb on + strand, within GFF1201at 46.305 kb on - strand, within GFF1201at 46.305 kb on - strand, within GFF1201at 46.305 kb on - strand, within GFF1201at 46.442 kb on - strand, within GFF1201at 46.442 kb on - strand, within GFF1201at 46.689 kb on + strandat 46.693 kb on + strandat 46.693 kb on + strandat 46.694 kb on - strandat 46.694 kb on - strandat 46.694 kb on - strandat 46.775 kb on + strand, within GFF1202at 46.878 kb on + strand, within GFF1202at 47.001 kb on - strand, within GFF1203at 47.015 kb on + strand, within GFF1203at 47.016 kb on - strand, within GFF1203at 47.016 kb on - strand, within GFF1203at 47.043 kb on - strand, within GFF1203at 47.043 kb on - strand, within GFF1203at 47.065 kb on + strand, within GFF1203at 47.065 kb on + strand, within GFF1203at 47.099 kb on - strand, within GFF1203at 47.099 kb on - strand, within GFF1203at 47.099 kb on - strand, within GFF1203at 47.100 kb on + strand, within GFF1203at 47.101 kb on - strand, within GFF1203at 47.142 kb on + strand, within GFF1203at 47.300 kb on + strand, within GFF1203at 47.301 kb on - strand, within GFF1203at 47.301 kb on - strand, within GFF1203at 47.330 kb on - strand, within GFF1203at 47.574 kb on - strandat 47.574 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with Br60_phage 0.0005 MOI
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44,932 + +0.2
44,950 - +0.3
44,952 + +0.6
44,989 + -0.6
44,989 + -0.3
44,990 - -0.2
45,049 + +1.8
45,049 + +1.2
45,050 - +1.3
45,073 + GFF1199 0.26 -0.8
45,074 - GFF1199 0.27 -0.3
45,074 - GFF1199 0.27 -0.9
45,148 - GFF1199 0.88 +0.4
45,148 - GFF1199 0.88 -0.0
45,161 + +0.8
45,271 + GFF1200 0.10 +1.6
45,272 - GFF1200 0.10 +0.4
45,282 + GFF1200 0.12 -0.2
45,316 + GFF1200 0.18 -0.5
45,323 + GFF1200 0.19 -1.4
45,382 - GFF1200 0.30 +0.1
45,444 + GFF1200 0.41 +0.1
45,445 - GFF1200 0.41 -0.4
45,452 + GFF1200 0.42 +0.3
45,453 - GFF1200 0.43 +0.3
45,621 + GFF1200 0.73 +0.5
45,622 - GFF1200 0.73 +0.2
45,649 + GFF1200 0.78 -0.1
45,650 - GFF1200 0.78 -0.6
45,795 + -0.0
45,795 + -0.1
45,795 + -0.6
46,060 + GFF1201 0.23 +1.3
46,060 + GFF1201 0.23 -0.5
46,060 + GFF1201 0.23 +0.7
46,061 - GFF1201 0.24 -0.3
46,064 + GFF1201 0.24 +0.1
46,064 + GFF1201 0.24 +2.2
46,064 + GFF1201 0.24 +1.5
46,064 + GFF1201 0.24 +0.8
46,065 - GFF1201 0.24 -0.4
46,065 - GFF1201 0.24 +1.8
46,065 - GFF1201 0.24 +2.8
46,065 - GFF1201 0.24 +0.6
46,104 + GFF1201 0.29 -1.2
46,305 - GFF1201 0.52 +0.4
46,305 - GFF1201 0.52 -0.0
46,305 - GFF1201 0.52 -0.5
46,442 - GFF1201 0.69 -0.1
46,442 - GFF1201 0.69 +0.4
46,689 + -0.6
46,693 + -0.7
46,693 + +0.2
46,694 - -0.1
46,694 - +0.6
46,694 - +1.8
46,775 + GFF1202 0.12 -0.9
46,878 + GFF1202 0.82 -0.2
47,001 - GFF1203 0.16 -1.8
47,015 + GFF1203 0.19 -0.0
47,016 - GFF1203 0.19 +2.2
47,016 - GFF1203 0.19 -0.2
47,043 - GFF1203 0.23 -0.1
47,043 - GFF1203 0.23 +1.5
47,065 + GFF1203 0.26 -0.0
47,065 + GFF1203 0.26 +1.0
47,099 - GFF1203 0.31 +1.8
47,099 - GFF1203 0.31 -0.5
47,099 - GFF1203 0.31 -0.1
47,100 + GFF1203 0.31 -0.4
47,101 - GFF1203 0.32 -0.0
47,142 + GFF1203 0.38 -1.0
47,300 + GFF1203 0.62 -0.9
47,301 - GFF1203 0.62 +0.1
47,301 - GFF1203 0.62 +0.2
47,330 - GFF1203 0.67 +1.3
47,574 - +0.6
47,574 - +0.1

Or see this region's nucleotide sequence