Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1028

Experiment: LB_plus_SM_buffer with Br60_phage 0.0005 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1026 and GFF1027 are separated by 50 nucleotidesGFF1027 and GFF1028 are separated by 150 nucleotidesGFF1028 and GFF1029 are separated by 120 nucleotides GFF1026 - Transcriptional activator protein bglJ, at 210,155 to 210,829 GFF1026 GFF1027 - tRNA proofreading protein STM4549, at 210,880 to 211,338 GFF1027 GFF1028 - Ferric reductase (1.6.99.14), at 211,489 to 212,277 GFF1028 GFF1029 - Putative membrane protein, at 212,398 to 213,324 GFF1029 Position (kb) 211 212 213Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 210.531 kb on + strand, within GFF1026at 210.535 kb on + strand, within GFF1026at 210.535 kb on + strand, within GFF1026at 210.544 kb on + strand, within GFF1026at 210.545 kb on - strand, within GFF1026at 210.604 kb on + strand, within GFF1026at 210.604 kb on + strand, within GFF1026at 210.681 kb on + strand, within GFF1026at 210.682 kb on - strand, within GFF1026at 210.694 kb on + strand, within GFF1026at 210.695 kb on - strand, within GFF1026at 210.783 kb on + strandat 210.783 kb on + strandat 210.783 kb on + strandat 210.784 kb on - strandat 210.784 kb on - strandat 210.977 kb on - strand, within GFF1027at 210.977 kb on - strand, within GFF1027at 210.987 kb on - strand, within GFF1027at 211.134 kb on + strand, within GFF1027at 211.134 kb on + strand, within GFF1027at 211.186 kb on + strand, within GFF1027at 211.206 kb on + strand, within GFF1027at 211.206 kb on + strand, within GFF1027at 211.226 kb on - strand, within GFF1027at 211.226 kb on - strand, within GFF1027at 211.395 kb on - strandat 211.425 kb on + strandat 211.426 kb on - strandat 211.428 kb on - strandat 211.431 kb on - strandat 211.496 kb on - strandat 211.520 kb on - strandat 211.580 kb on - strand, within GFF1028at 211.709 kb on - strand, within GFF1028at 211.712 kb on + strand, within GFF1028at 211.905 kb on + strand, within GFF1028at 211.905 kb on + strand, within GFF1028at 211.945 kb on + strand, within GFF1028at 211.946 kb on - strand, within GFF1028at 211.983 kb on - strand, within GFF1028at 211.983 kb on - strand, within GFF1028at 211.983 kb on - strand, within GFF1028at 212.045 kb on + strand, within GFF1028at 212.046 kb on - strand, within GFF1028at 212.245 kb on - strandat 212.296 kb on + strandat 212.356 kb on - strandat 212.566 kb on - strand, within GFF1029at 212.586 kb on - strand, within GFF1029at 212.586 kb on - strand, within GFF1029at 212.588 kb on - strand, within GFF1029at 212.751 kb on + strand, within GFF1029at 212.752 kb on - strand, within GFF1029at 212.752 kb on - strand, within GFF1029at 212.752 kb on - strand, within GFF1029at 212.752 kb on - strand, within GFF1029at 212.752 kb on - strand, within GFF1029at 212.771 kb on + strand, within GFF1029at 212.807 kb on + strand, within GFF1029at 212.807 kb on + strand, within GFF1029at 212.808 kb on - strand, within GFF1029at 212.834 kb on - strand, within GFF1029at 212.838 kb on + strand, within GFF1029at 212.870 kb on + strand, within GFF1029at 212.870 kb on + strand, within GFF1029at 212.870 kb on + strand, within GFF1029at 212.870 kb on + strand, within GFF1029at 212.871 kb on - strand, within GFF1029at 212.871 kb on - strand, within GFF1029at 212.896 kb on - strand, within GFF1029at 212.963 kb on + strand, within GFF1029at 213.086 kb on + strand, within GFF1029at 213.145 kb on - strand, within GFF1029at 213.255 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with Br60_phage 0.0005 MOI
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210,531 + GFF1026 0.56 -0.2
210,535 + GFF1026 0.56 +1.1
210,535 + GFF1026 0.56 +0.5
210,544 + GFF1026 0.58 -0.6
210,545 - GFF1026 0.58 +1.4
210,604 + GFF1026 0.67 +0.3
210,604 + GFF1026 0.67 +0.8
210,681 + GFF1026 0.78 +0.2
210,682 - GFF1026 0.78 +0.4
210,694 + GFF1026 0.80 -0.3
210,695 - GFF1026 0.80 +0.2
210,783 + -0.6
210,783 + +0.2
210,783 + +0.8
210,784 - +0.6
210,784 - +2.7
210,977 - GFF1027 0.21 -0.8
210,977 - GFF1027 0.21 +0.7
210,987 - GFF1027 0.23 +0.6
211,134 + GFF1027 0.55 -0.8
211,134 + GFF1027 0.55 +4.1
211,186 + GFF1027 0.67 -0.3
211,206 + GFF1027 0.71 +1.6
211,206 + GFF1027 0.71 +1.1
211,226 - GFF1027 0.75 -0.0
211,226 - GFF1027 0.75 +1.4
211,395 - +0.8
211,425 + -0.9
211,426 - -1.4
211,428 - +1.6
211,431 - -1.1
211,496 - +0.1
211,520 - +0.4
211,580 - GFF1028 0.12 +0.6
211,709 - GFF1028 0.28 -0.0
211,712 + GFF1028 0.28 -0.6
211,905 + GFF1028 0.53 +2.1
211,905 + GFF1028 0.53 +0.3
211,945 + GFF1028 0.58 -0.5
211,946 - GFF1028 0.58 -0.0
211,983 - GFF1028 0.63 -0.6
211,983 - GFF1028 0.63 +1.3
211,983 - GFF1028 0.63 +1.6
212,045 + GFF1028 0.70 +0.3
212,046 - GFF1028 0.71 -0.6
212,245 - +0.0
212,296 + -0.1
212,356 - +0.3
212,566 - GFF1029 0.18 +3.6
212,586 - GFF1029 0.20 +0.2
212,586 - GFF1029 0.20 +1.1
212,588 - GFF1029 0.20 -2.3
212,751 + GFF1029 0.38 +0.4
212,752 - GFF1029 0.38 -1.9
212,752 - GFF1029 0.38 +1.8
212,752 - GFF1029 0.38 +0.6
212,752 - GFF1029 0.38 -0.2
212,752 - GFF1029 0.38 -0.3
212,771 + GFF1029 0.40 +1.8
212,807 + GFF1029 0.44 +0.1
212,807 + GFF1029 0.44 +0.4
212,808 - GFF1029 0.44 -0.3
212,834 - GFF1029 0.47 -0.2
212,838 + GFF1029 0.47 -1.2
212,870 + GFF1029 0.51 -0.1
212,870 + GFF1029 0.51 +0.9
212,870 + GFF1029 0.51 +0.3
212,870 + GFF1029 0.51 +0.2
212,871 - GFF1029 0.51 +0.5
212,871 - GFF1029 0.51 +0.1
212,896 - GFF1029 0.54 -1.0
212,963 + GFF1029 0.61 +0.5
213,086 + GFF1029 0.74 -0.5
213,145 - GFF1029 0.81 +0.2
213,255 + -0.4

Or see this region's nucleotide sequence