Strain Fitness in Escherichia coli BW25113 around b2805
Experiment: diethyl ether 5 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | diethyl ether 5 vol% |
---|---|---|---|---|---|
remove | |||||
2,936,392 | - | fucK | b2803 | 0.64 | -0.5 |
2,936,441 | + | fucK | b2803 | 0.68 | +1.1 |
2,936,538 | + | fucK | b2803 | 0.74 | +0.3 |
2,936,538 | + | fucK | b2803 | 0.74 | +0.4 |
2,936,628 | + | fucK | b2803 | 0.81 | +0.3 |
2,936,630 | + | fucK | b2803 | 0.81 | -0.2 |
2,936,630 | + | fucK | b2803 | 0.81 | +0.7 |
2,936,656 | + | fucK | b2803 | 0.83 | +0.3 |
2,936,656 | + | fucK | b2803 | 0.83 | +0.5 |
2,936,664 | - | fucK | b2803 | 0.83 | -0.4 |
2,936,664 | - | fucK | b2803 | 0.83 | +0.3 |
2,936,808 | - | -0.5 | |||
2,936,845 | + | +0.0 | |||
2,936,845 | + | -0.2 | |||
2,936,974 | - | fucU | b2804 | 0.15 | +0.5 |
2,936,974 | - | fucU | b2804 | 0.15 | +0.9 |
2,937,103 | + | fucU | b2804 | 0.46 | -1.2 |
2,937,103 | + | fucU | b2804 | 0.46 | -0.3 |
2,937,173 | + | fucU | b2804 | 0.62 | -0.5 |
2,937,434 | - | -0.2 | |||
2,937,434 | - | -0.9 | |||
2,937,439 | - | +1.2 | |||
2,937,473 | - | fucR | b2805 | 0.11 | +1.6 |
2,937,629 | + | fucR | b2805 | 0.33 | -0.5 |
2,937,677 | - | fucR | b2805 | 0.39 | +0.0 |
2,937,677 | - | fucR | b2805 | 0.39 | -0.4 |
2,937,681 | + | fucR | b2805 | 0.40 | +0.3 |
2,937,747 | - | fucR | b2805 | 0.49 | -0.1 |
2,937,769 | + | fucR | b2805 | 0.52 | -1.2 |
2,937,769 | + | fucR | b2805 | 0.52 | -0.1 |
2,937,811 | - | fucR | b2805 | 0.58 | +0.3 |
2,937,811 | - | fucR | b2805 | 0.58 | -0.0 |
2,937,817 | + | fucR | b2805 | 0.58 | +0.3 |
2,937,862 | + | fucR | b2805 | 0.64 | +0.4 |
2,938,088 | + | -0.2 | |||
2,938,132 | - | +0.7 | |||
2,938,204 | - | -0.1 | |||
2,938,353 | - | ygdE | b2806 | 0.17 | -0.3 |
2,938,353 | - | ygdE | b2806 | 0.17 | +0.8 |
2,938,398 | - | ygdE | b2806 | 0.21 | +0.8 |
2,938,443 | + | ygdE | b2806 | 0.25 | -2.1 |
2,938,443 | - | ygdE | b2806 | 0.25 | +0.3 |
2,938,553 | + | ygdE | b2806 | 0.35 | -0.3 |
2,938,561 | - | ygdE | b2806 | 0.36 | +0.0 |
2,938,561 | - | ygdE | b2806 | 0.36 | +0.8 |
2,938,587 | + | ygdE | b2806 | 0.38 | +0.0 |
2,938,610 | + | ygdE | b2806 | 0.40 | +0.8 |
2,938,698 | + | ygdE | b2806 | 0.48 | +0.5 |
2,938,711 | - | ygdE | b2806 | 0.50 | -0.3 |
2,938,711 | - | ygdE | b2806 | 0.50 | +0.4 |
2,938,750 | - | ygdE | b2806 | 0.53 | -0.3 |
2,938,758 | + | ygdE | b2806 | 0.54 | -0.2 |
2,938,780 | - | ygdE | b2806 | 0.56 | +0.3 |
2,938,780 | - | ygdE | b2806 | 0.56 | -0.6 |
2,938,795 | - | ygdE | b2806 | 0.57 | -2.0 |
2,938,795 | - | ygdE | b2806 | 0.57 | +0.2 |
2,938,810 | + | ygdE | b2806 | 0.59 | +0.4 |
2,938,810 | + | ygdE | b2806 | 0.59 | +0.1 |
2,938,868 | - | ygdE | b2806 | 0.64 | +0.7 |
2,938,883 | - | ygdE | b2806 | 0.65 | -0.4 |
2,938,969 | + | ygdE | b2806 | 0.73 | +0.1 |
2,938,974 | + | ygdE | b2806 | 0.73 | +0.2 |
2,938,974 | + | ygdE | b2806 | 0.73 | -1.2 |
2,938,986 | + | ygdE | b2806 | 0.75 | -0.1 |
2,939,038 | - | ygdE | b2806 | 0.79 | +0.1 |
Or see this region's nucleotide sequence