Experiment: Choline chloride 300 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_23755 and PS417_23760 are separated by 4 nucleotides PS417_23760 and PS417_23765 overlap by 4 nucleotides PS417_23765 and PS417_23770 are separated by 142 nucleotides
PS417_23755: PS417_23755 - membrane protein, at 5,135,590 to 5,136,081
_23755
PS417_23760: PS417_23760 - DeoR faimly transcriptional regulator, at 5,136,086 to 5,137,348
_23760
PS417_23765: PS417_23765 - hypothetical protein, at 5,137,345 to 5,137,920
_23765
PS417_23770: PS417_23770 - exodeoxyribonuclease V subunit alpha, at 5,138,063 to 5,140,132
_23770
Position (kb) 5136
5137
5138 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5135.233 kb on - strand at 5135.251 kb on + strand at 5135.386 kb on + strand at 5135.387 kb on - strand at 5135.505 kb on + strand at 5135.566 kb on + strand at 5135.771 kb on + strand, within PS417_23755 at 5135.772 kb on - strand, within PS417_23755 at 5135.772 kb on - strand, within PS417_23755 at 5136.168 kb on + strand at 5136.168 kb on + strand at 5136.168 kb on + strand at 5136.257 kb on + strand, within PS417_23760 at 5136.258 kb on - strand, within PS417_23760 at 5136.508 kb on - strand, within PS417_23760 at 5136.994 kb on + strand, within PS417_23760 at 5137.176 kb on + strand, within PS417_23760 at 5137.176 kb on + strand, within PS417_23760 at 5137.177 kb on - strand, within PS417_23760 at 5137.219 kb on - strand, within PS417_23760 at 5137.400 kb on - strand at 5137.580 kb on + strand, within PS417_23765 at 5137.580 kb on + strand, within PS417_23765 at 5137.581 kb on - strand, within PS417_23765 at 5137.707 kb on + strand, within PS417_23765 at 5137.708 kb on - strand, within PS417_23765 at 5137.708 kb on - strand, within PS417_23765 at 5137.749 kb on - strand, within PS417_23765 at 5137.749 kb on - strand, within PS417_23765 at 5137.867 kb on + strand at 5137.868 kb on - strand at 5137.947 kb on - strand at 5138.049 kb on + strand at 5138.050 kb on - strand at 5138.125 kb on + strand at 5138.126 kb on - strand at 5138.205 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Choline chloride 300 mM remove 5,135,233 - -0.0 5,135,251 + -0.3 5,135,386 + +0.3 5,135,387 - -2.1 5,135,505 + +0.2 5,135,566 + +1.3 5,135,771 + PS417_23755 0.37 +1.1 5,135,772 - PS417_23755 0.37 +0.4 5,135,772 - PS417_23755 0.37 -0.4 5,136,168 + +1.3 5,136,168 + +1.8 5,136,168 + +0.9 5,136,257 + PS417_23760 0.14 +1.4 5,136,258 - PS417_23760 0.14 +1.5 5,136,508 - PS417_23760 0.33 +1.3 5,136,994 + PS417_23760 0.72 +2.1 5,137,176 + PS417_23760 0.86 +1.5 5,137,176 + PS417_23760 0.86 +0.6 5,137,177 - PS417_23760 0.86 +1.5 5,137,219 - PS417_23760 0.90 +1.5 5,137,400 - -1.4 5,137,580 + PS417_23765 0.41 +0.9 5,137,580 + PS417_23765 0.41 +1.3 5,137,581 - PS417_23765 0.41 -1.3 5,137,707 + PS417_23765 0.63 +1.4 5,137,708 - PS417_23765 0.63 -0.8 5,137,708 - PS417_23765 0.63 +0.7 5,137,749 - PS417_23765 0.70 -0.9 5,137,749 - PS417_23765 0.70 -0.1 5,137,867 + +1.3 5,137,868 - +0.4 5,137,947 - -0.6 5,138,049 + -1.0 5,138,050 - -1.8 5,138,125 + -0.6 5,138,126 - -1.9 5,138,205 + -2.5
Or see this region's nucleotide sequence