Strain Fitness in Pseudomonas simiae WCS417 around PS417_15080

Experiment: Choline chloride 300 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_15075 and PS417_15080 are separated by 483 nucleotidesPS417_15080 and PS417_15085 are separated by 146 nucleotides PS417_15075: PS417_15075 - NAD-glutamate dehydrogenase, at 3,293,439 to 3,298,307 _15075 PS417_15080: PS417_15080 - hypothetical protein, at 3,298,791 to 3,299,144 _15080 PS417_15085: PS417_15085 - ATPase AAA, at 3,299,291 to 3,300,250 _15085 Position (kb) 3298 3299 3300Strain fitness (log2 ratio) -3 -2 -1 0 1at 3297.832 kb on + strandat 3297.832 kb on + strandat 3297.832 kb on + strandat 3298.069 kb on + strandat 3298.332 kb on + strandat 3298.452 kb on + strandat 3298.452 kb on + strandat 3298.453 kb on - strandat 3298.453 kb on - strandat 3299.130 kb on + strandat 3299.228 kb on - strandat 3299.335 kb on + strandat 3299.335 kb on + strandat 3299.336 kb on - strandat 3299.402 kb on - strand, within PS417_15085at 3299.537 kb on + strand, within PS417_15085at 3299.690 kb on + strand, within PS417_15085at 3299.691 kb on - strand, within PS417_15085at 3299.753 kb on + strand, within PS417_15085at 3299.833 kb on + strand, within PS417_15085at 3299.939 kb on + strand, within PS417_15085at 3299.940 kb on - strand, within PS417_15085at 3299.940 kb on - strand, within PS417_15085at 3299.963 kb on + strand, within PS417_15085at 3299.963 kb on + strand, within PS417_15085

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Choline chloride 300 mM
remove
3,297,832 + +0.8
3,297,832 + +0.4
3,297,832 + -0.8
3,298,069 + -0.6
3,298,332 + +0.0
3,298,452 + -0.6
3,298,452 + -0.4
3,298,453 - +0.1
3,298,453 - -1.2
3,299,130 + -0.5
3,299,228 - -2.7
3,299,335 + -0.6
3,299,335 + -2.6
3,299,336 - +0.4
3,299,402 - PS417_15085 0.12 -1.8
3,299,537 + PS417_15085 0.26 -0.6
3,299,690 + PS417_15085 0.42 +0.1
3,299,691 - PS417_15085 0.42 -2.9
3,299,753 + PS417_15085 0.48 -1.9
3,299,833 + PS417_15085 0.56 -0.9
3,299,939 + PS417_15085 0.68 -0.9
3,299,940 - PS417_15085 0.68 -1.2
3,299,940 - PS417_15085 0.68 -1.9
3,299,963 + PS417_15085 0.70 -0.6
3,299,963 + PS417_15085 0.70 -1.7

Or see this region's nucleotide sequence