Strain Fitness in Escherichia coli BW25113 around b1276
Experiment: decyl alcohol 5 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | decyl alcohol 5 vol% |
---|---|---|---|---|---|
remove | |||||
1,332,922 | + | +0.1 | |||
1,332,930 | - | -0.2 | |||
1,332,930 | - | -0.0 | |||
1,333,156 | + | +0.1 | |||
1,333,158 | - | -0.2 | |||
1,333,160 | - | +0.4 | |||
1,333,197 | + | yciX_1 | b4522 | 0.10 | +0.6 |
1,333,198 | + | yciX_1 | b4522 | 0.11 | +0.1 |
1,333,275 | - | yciX_1 | b4522 | 0.71 | -2.0 |
1,333,286 | - | yciX_1 | b4522 | 0.79 | +0.1 |
1,333,286 | - | yciX_1 | b4522 | 0.79 | +0.3 |
1,333,301 | + | -1.2 | |||
1,333,301 | + | +0.6 | |||
1,333,311 | + | +0.2 | |||
1,333,320 | - | +0.3 | |||
1,333,320 | - | +0.7 | |||
1,333,322 | + | -0.2 | |||
1,333,322 | + | +0.2 | |||
1,333,345 | + | yciX | b4523 | 0.18 | -0.1 |
1,333,345 | + | yciX | b4523 | 0.18 | +0.3 |
1,333,345 | + | yciX | b4523 | 0.18 | -0.2 |
1,333,349 | + | yciX | b4523 | 0.20 | +0.4 |
1,333,418 | + | yciX | b4523 | 0.61 | +1.0 |
1,333,420 | - | yciX | b4523 | 0.62 | +0.4 |
1,333,434 | - | yciX | b4523 | 0.71 | +0.1 |
1,333,450 | - | yciX | b4523 | 0.80 | -0.8 |
1,333,450 | - | yciX | b4523 | 0.80 | -0.1 |
1,333,525 | + | +0.0 | |||
1,333,538 | + | +0.7 | |||
1,333,578 | + | -0.3 | |||
1,333,606 | - | -0.1 | |||
1,333,606 | - | -0.0 | |||
1,333,606 | - | +0.5 | |||
1,333,606 | - | +1.1 | |||
1,333,630 | - | +0.2 | |||
1,333,655 | + | +0.7 | |||
1,333,670 | + | -0.5 | |||
1,333,670 | + | +0.2 | |||
1,333,678 | - | +0.1 | |||
1,333,794 | + | +0.2 | |||
1,333,794 | + | +0.3 | |||
1,333,818 | + | +0.4 | |||
1,333,838 | + | -0.3 | |||
1,333,841 | - | +0.4 | |||
1,333,847 | - | -0.2 | |||
1,333,873 | - | +0.2 | |||
1,333,932 | - | -0.9 | |||
1,334,080 | - | +0.2 | |||
1,334,080 | - | +1.5 | |||
1,334,663 | - | acnA | b1276 | 0.30 | +0.3 |
1,334,824 | - | acnA | b1276 | 0.36 | +0.3 |
1,334,824 | - | acnA | b1276 | 0.36 | +0.6 |
1,334,962 | + | acnA | b1276 | 0.41 | +0.4 |
1,335,010 | + | acnA | b1276 | 0.43 | +1.0 |
1,335,010 | + | acnA | b1276 | 0.43 | +1.3 |
1,335,167 | + | acnA | b1276 | 0.49 | +0.0 |
1,335,181 | + | acnA | b1276 | 0.50 | +0.4 |
1,335,573 | - | acnA | b1276 | 0.64 | +0.6 |
1,335,601 | - | acnA | b1276 | 0.65 | -0.0 |
1,335,601 | - | acnA | b1276 | 0.65 | +0.5 |
1,335,669 | + | acnA | b1276 | 0.68 | +1.3 |
1,335,669 | + | acnA | b1276 | 0.68 | +0.5 |
1,335,825 | - | acnA | b1276 | 0.74 | -1.4 |
1,335,825 | - | acnA | b1276 | 0.74 | +0.7 |
1,335,902 | - | acnA | b1276 | 0.76 | -0.1 |
1,335,902 | - | acnA | b1276 | 0.76 | -0.9 |
1,336,129 | - | acnA | b1276 | 0.85 | +0.9 |
1,336,223 | + | acnA | b1276 | 0.88 | +0.2 |
1,337,219 | - | +0.5 | |||
1,337,219 | - | -0.3 | |||
1,337,498 | + | pgpB | b1278 | 0.19 | +0.4 |
1,337,503 | + | pgpB | b1278 | 0.19 | -0.3 |
1,337,522 | - | pgpB | b1278 | 0.22 | +0.1 |
Or see this region's nucleotide sequence