Strain Fitness in Escherichia coli BW25113 around b1019
Experiment: decyl alcohol 5 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | decyl alcohol 5 vol% |
---|---|---|---|---|---|
remove | |||||
1,081,663 | + | ycdO | b1018 | 0.17 | +0.2 |
1,081,663 | + | ycdO | b1018 | 0.17 | -0.0 |
1,081,663 | - | ycdO | b1018 | 0.17 | +0.6 |
1,081,663 | - | ycdO | b1018 | 0.17 | +0.1 |
1,081,678 | - | ycdO | b1018 | 0.19 | +0.0 |
1,081,852 | + | ycdO | b1018 | 0.34 | -0.2 |
1,081,852 | + | ycdO | b1018 | 0.34 | -0.1 |
1,081,908 | + | ycdO | b1018 | 0.39 | +0.1 |
1,081,944 | + | ycdO | b1018 | 0.42 | +0.3 |
1,081,979 | + | ycdO | b1018 | 0.45 | -0.5 |
1,082,039 | + | ycdO | b1018 | 0.51 | +0.4 |
1,082,039 | + | ycdO | b1018 | 0.51 | -1.3 |
1,082,156 | - | ycdO | b1018 | 0.61 | +0.5 |
1,082,179 | + | ycdO | b1018 | 0.63 | -0.1 |
1,082,192 | - | ycdO | b1018 | 0.64 | -0.4 |
1,082,382 | + | ycdO | b1018 | 0.81 | -0.3 |
1,082,392 | + | ycdO | b1018 | 0.82 | +0.4 |
1,082,515 | + | -0.9 | |||
1,082,515 | + | +0.7 | |||
1,082,594 | + | -0.3 | |||
1,082,783 | - | ycdB | b1019 | 0.14 | -0.5 |
1,082,787 | + | ycdB | b1019 | 0.15 | +0.5 |
1,082,912 | + | ycdB | b1019 | 0.25 | -0.3 |
1,083,109 | + | ycdB | b1019 | 0.40 | +0.9 |
1,083,141 | - | ycdB | b1019 | 0.43 | +1.0 |
1,083,141 | - | ycdB | b1019 | 0.43 | -0.7 |
1,083,197 | + | ycdB | b1019 | 0.47 | -0.4 |
1,083,212 | + | ycdB | b1019 | 0.48 | +0.2 |
1,083,620 | + | ycdB | b1019 | 0.80 | +0.9 |
1,083,620 | + | ycdB | b1019 | 0.80 | -0.4 |
1,083,621 | + | ycdB | b1019 | 0.80 | -0.7 |
1,083,650 | + | ycdB | b1019 | 0.83 | +0.1 |
1,083,720 | - | ycdB | b1019 | 0.88 | +0.3 |
1,083,787 | - | +0.3 | |||
1,083,904 | + | -0.8 | |||
1,084,000 | - | +0.8 | |||
1,084,124 | - | +0.1 | |||
1,084,407 | - | phoH | b1020 | 0.18 | -0.7 |
1,084,446 | + | phoH | b1020 | 0.22 | +0.4 |
1,084,494 | + | phoH | b1020 | 0.26 | +0.1 |
1,084,561 | + | phoH | b1020 | 0.32 | +0.7 |
1,084,620 | - | phoH | b1020 | 0.38 | +0.4 |
1,084,765 | + | phoH | b1020 | 0.52 | +0.3 |
1,084,860 | - | phoH | b1020 | 0.61 | +0.3 |
Or see this region's nucleotide sequence