Experiment: R2A with Gentamicin 0.00125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0939 and Atu0940 overlap by 1 nucleotides Atu0940 and Atu0941 are separated by 97 nucleotides Atu0941 and Atu0942 are separated by 106 nucleotides
Atu0939: Atu0939 - PemI protein, at 928,967 to 929,233
Atu0939
Atu0940: Atu0940 - PemK protein, at 929,233 to 929,592
Atu0940
Atu0941: Atu0941 - hypothetical protein, at 929,690 to 929,926
Atu0941
Atu0942: Atu0942 - MFS permease, at 930,033 to 931,415
Atu0942
Position (kb) 929
930 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 928.709 kb on - strand at 928.709 kb on - strand at 928.719 kb on + strand at 928.739 kb on - strand at 928.812 kb on + strand at 928.820 kb on - strand at 928.820 kb on - strand at 928.820 kb on - strand at 928.845 kb on - strand at 928.845 kb on - strand at 928.957 kb on - strand at 928.991 kb on + strand at 929.009 kb on - strand, within Atu0939 at 929.012 kb on - strand, within Atu0939 at 929.162 kb on - strand, within Atu0939 at 929.256 kb on + strand at 929.326 kb on + strand, within Atu0940 at 929.414 kb on + strand, within Atu0940 at 929.477 kb on - strand, within Atu0940 at 929.508 kb on - strand, within Atu0940 at 929.508 kb on - strand, within Atu0940 at 929.597 kb on + strand at 929.598 kb on + strand at 929.598 kb on + strand at 929.605 kb on - strand at 929.606 kb on - strand at 929.629 kb on - strand at 929.664 kb on - strand at 929.665 kb on + strand at 929.803 kb on + strand, within Atu0941 at 929.971 kb on + strand at 929.981 kb on - strand at 930.008 kb on + strand at 930.016 kb on - strand at 930.060 kb on + strand at 930.070 kb on + strand at 930.254 kb on - strand, within Atu0942 at 930.274 kb on + strand, within Atu0942 at 930.460 kb on - strand, within Atu0942 at 930.473 kb on + strand, within Atu0942 at 930.623 kb on - strand, within Atu0942 at 930.629 kb on - strand, within Atu0942 at 930.656 kb on + strand, within Atu0942 at 930.739 kb on + strand, within Atu0942 at 930.744 kb on + strand, within Atu0942 at 930.744 kb on + strand, within Atu0942 at 930.749 kb on + strand, within Atu0942 at 930.769 kb on - strand, within Atu0942 at 930.868 kb on - strand, within Atu0942 at 930.870 kb on - strand, within Atu0942
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Gentamicin 0.00125 mM remove 928,709 - +0.0 928,709 - +0.1 928,719 + +0.3 928,739 - +1.4 928,812 + +0.3 928,820 - +0.4 928,820 - +0.0 928,820 - +0.8 928,845 - +0.3 928,845 - +0.2 928,957 - +0.6 928,991 + +0.5 929,009 - Atu0939 0.16 -0.1 929,012 - Atu0939 0.17 -0.2 929,162 - Atu0939 0.73 +0.6 929,256 + +0.6 929,326 + Atu0940 0.26 -1.4 929,414 + Atu0940 0.50 +0.1 929,477 - Atu0940 0.68 +3.2 929,508 - Atu0940 0.76 +0.1 929,508 - Atu0940 0.76 -0.3 929,597 + -2.0 929,598 + +0.7 929,598 + -0.8 929,605 - -0.7 929,606 - +0.1 929,629 - -0.1 929,664 - -0.2 929,665 + -0.1 929,803 + Atu0941 0.48 -2.6 929,971 + +0.1 929,981 - -0.3 930,008 + +0.3 930,016 - +0.8 930,060 + +0.4 930,070 + -0.1 930,254 - Atu0942 0.16 +0.4 930,274 + Atu0942 0.17 -0.0 930,460 - Atu0942 0.31 -0.6 930,473 + Atu0942 0.32 -0.6 930,623 - Atu0942 0.43 -0.0 930,629 - Atu0942 0.43 +0.5 930,656 + Atu0942 0.45 -0.1 930,739 + Atu0942 0.51 +0.1 930,744 + Atu0942 0.51 -0.0 930,744 + Atu0942 0.51 +0.9 930,749 + Atu0942 0.52 -0.0 930,769 - Atu0942 0.53 -0.3 930,868 - Atu0942 0.60 +2.4 930,870 - Atu0942 0.61 +0.1
Or see this region's nucleotide sequence