Strain Fitness in Escherichia coli BW25113 around b2708
Experiment: hexadecane 5 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | hexadecane 5 vol% |
---|---|---|---|---|---|
remove | |||||
2,826,876 | - | gutM | b2706 | 0.65 | -0.3 |
2,826,932 | + | gutM | b2706 | 0.80 | -0.0 |
2,826,963 | - | gutM | b2706 | 0.89 | -0.1 |
2,827,166 | - | srlR | b2707 | 0.13 | +0.3 |
2,827,166 | - | srlR | b2707 | 0.13 | +0.6 |
2,827,191 | - | srlR | b2707 | 0.16 | +0.7 |
2,827,191 | - | srlR | b2707 | 0.16 | +0.6 |
2,827,193 | + | srlR | b2707 | 0.16 | -0.2 |
2,827,193 | + | srlR | b2707 | 0.16 | +0.5 |
2,827,201 | - | srlR | b2707 | 0.17 | -0.0 |
2,827,298 | + | srlR | b2707 | 0.30 | +0.2 |
2,827,368 | + | srlR | b2707 | 0.39 | -0.4 |
2,827,425 | + | srlR | b2707 | 0.46 | +0.5 |
2,827,431 | + | srlR | b2707 | 0.47 | +0.3 |
2,827,481 | + | srlR | b2707 | 0.53 | -0.9 |
2,827,483 | - | srlR | b2707 | 0.53 | -1.0 |
2,827,549 | + | srlR | b2707 | 0.62 | +0.4 |
2,827,619 | + | srlR | b2707 | 0.71 | +0.3 |
2,827,619 | + | srlR | b2707 | 0.71 | +0.3 |
2,827,893 | - | +1.0 | |||
2,828,144 | + | gutQ | b2708 | 0.32 | -0.1 |
2,828,242 | - | gutQ | b2708 | 0.42 | -0.5 |
2,828,313 | - | gutQ | b2708 | 0.49 | +0.2 |
2,828,314 | - | gutQ | b2708 | 0.50 | +0.2 |
2,828,394 | - | gutQ | b2708 | 0.58 | -0.0 |
2,828,394 | - | gutQ | b2708 | 0.58 | -0.6 |
2,828,394 | - | gutQ | b2708 | 0.58 | +0.3 |
2,828,405 | - | gutQ | b2708 | 0.59 | +0.1 |
2,829,156 | - | ygaA | b2709 | 0.24 | +0.5 |
2,829,156 | - | ygaA | b2709 | 0.24 | -0.8 |
2,829,382 | + | ygaA | b2709 | 0.39 | -0.0 |
2,829,382 | + | ygaA | b2709 | 0.39 | +0.5 |
2,829,400 | + | ygaA | b2709 | 0.40 | -0.7 |
2,829,417 | + | ygaA | b2709 | 0.41 | +0.6 |
2,829,527 | + | ygaA | b2709 | 0.48 | +0.1 |
2,829,527 | + | ygaA | b2709 | 0.48 | -0.2 |
2,829,544 | - | ygaA | b2709 | 0.49 | -0.3 |
2,829,583 | + | ygaA | b2709 | 0.52 | -0.0 |
2,829,583 | + | ygaA | b2709 | 0.52 | -0.2 |
2,829,687 | + | ygaA | b2709 | 0.59 | -0.5 |
2,829,687 | + | ygaA | b2709 | 0.59 | +0.3 |
Or see this region's nucleotide sequence