Strain Fitness in Escherichia coli BW25113 around b2552

Experiment: hexadecane 5 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntglyA and hmp are separated by 327 nucleotideshmp and glnB are separated by 44 nucleotidesglnB and yfhA are separated by 60 nucleotides b2551: glyA - serine hydroxymethyltransferase (NCBI), at 2,682,276 to 2,683,529 glyA b2552: hmp - fused nitric oxide dioxygenase/dihydropteridine reductase 2 (NCBI), at 2,683,857 to 2,685,047 hmp b2553: glnB - regulatory protein P-II for glutamine synthetase (NCBI), at 2,685,092 to 2,685,430 glnB b2554: yfhA - predicted DNA-binding response regulator in two-component system (NCBI), at 2,685,491 to 2,686,825 yfhA Position (kb) 2683 2684 2685 2686Strain fitness (log2 ratio) -2 -1 0 1at 2683.781 kb on + strandat 2683.789 kb on - strandat 2683.874 kb on - strandat 2684.075 kb on + strand, within hmpat 2684.075 kb on + strand, within hmpat 2684.076 kb on - strand, within hmpat 2684.076 kb on - strand, within hmpat 2684.113 kb on - strand, within hmpat 2684.136 kb on + strand, within hmpat 2684.136 kb on + strand, within hmpat 2684.146 kb on - strand, within hmpat 2684.146 kb on - strand, within hmpat 2684.146 kb on - strand, within hmpat 2684.146 kb on - strand, within hmpat 2684.160 kb on - strand, within hmpat 2684.160 kb on - strand, within hmpat 2684.191 kb on - strand, within hmpat 2684.191 kb on - strand, within hmpat 2684.207 kb on + strand, within hmpat 2684.222 kb on + strand, within hmpat 2684.222 kb on + strand, within hmpat 2684.330 kb on + strand, within hmpat 2684.338 kb on - strand, within hmpat 2684.338 kb on - strand, within hmpat 2684.405 kb on - strand, within hmpat 2684.476 kb on - strand, within hmpat 2684.721 kb on + strand, within hmpat 2684.789 kb on + strand, within hmpat 2684.789 kb on + strand, within hmpat 2684.827 kb on - strand, within hmpat 2684.830 kb on - strand, within hmpat 2684.970 kb on + strandat 2684.970 kb on + strandat 2685.032 kb on + strandat 2685.047 kb on - strandat 2685.079 kb on + strandat 2685.107 kb on + strandat 2685.107 kb on + strandat 2685.120 kb on + strandat 2685.120 kb on + strandat 2685.223 kb on - strand, within glnBat 2685.273 kb on + strand, within glnBat 2685.273 kb on + strand, within glnBat 2685.281 kb on - strand, within glnBat 2685.288 kb on + strand, within glnBat 2685.311 kb on - strand, within glnBat 2685.311 kb on - strand, within glnBat 2685.311 kb on - strand, within glnBat 2685.311 kb on - strand, within glnBat 2685.371 kb on - strand, within glnBat 2685.488 kb on + strandat 2685.488 kb on + strandat 2685.525 kb on - strandat 2685.682 kb on + strand, within yfhAat 2685.703 kb on + strand, within yfhAat 2685.703 kb on + strand, within yfhAat 2685.725 kb on + strand, within yfhAat 2685.821 kb on - strand, within yfhAat 2685.821 kb on - strand, within yfhAat 2685.863 kb on - strand, within yfhAat 2685.885 kb on - strand, within yfhAat 2685.885 kb on - strand, within yfhAat 2685.897 kb on - strand, within yfhA

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction hexadecane 5 vol%
remove
2,683,781 + -0.4
2,683,789 - +0.0
2,683,874 - +0.2
2,684,075 + hmp b2552 0.18 +0.2
2,684,075 + hmp b2552 0.18 +0.4
2,684,076 - hmp b2552 0.18 -0.8
2,684,076 - hmp b2552 0.18 -0.6
2,684,113 - hmp b2552 0.21 -0.6
2,684,136 + hmp b2552 0.23 +0.0
2,684,136 + hmp b2552 0.23 -0.2
2,684,146 - hmp b2552 0.24 -0.6
2,684,146 - hmp b2552 0.24 -0.9
2,684,146 - hmp b2552 0.24 -0.1
2,684,146 - hmp b2552 0.24 +0.4
2,684,160 - hmp b2552 0.25 +0.6
2,684,160 - hmp b2552 0.25 +0.9
2,684,191 - hmp b2552 0.28 -0.3
2,684,191 - hmp b2552 0.28 -0.5
2,684,207 + hmp b2552 0.29 +0.4
2,684,222 + hmp b2552 0.31 +1.7
2,684,222 + hmp b2552 0.31 -2.0
2,684,330 + hmp b2552 0.40 -0.1
2,684,338 - hmp b2552 0.40 -0.3
2,684,338 - hmp b2552 0.40 +1.4
2,684,405 - hmp b2552 0.46 +0.2
2,684,476 - hmp b2552 0.52 -0.2
2,684,721 + hmp b2552 0.73 +0.6
2,684,789 + hmp b2552 0.78 -0.2
2,684,789 + hmp b2552 0.78 +0.1
2,684,827 - hmp b2552 0.81 +0.2
2,684,830 - hmp b2552 0.82 -0.1
2,684,970 + +0.7
2,684,970 + +0.3
2,685,032 + +0.5
2,685,047 - +0.9
2,685,079 + -0.1
2,685,107 + +0.2
2,685,107 + -0.4
2,685,120 + -0.1
2,685,120 + +0.5
2,685,223 - glnB b2553 0.39 -0.4
2,685,273 + glnB b2553 0.53 +0.1
2,685,273 + glnB b2553 0.53 +0.1
2,685,281 - glnB b2553 0.56 -1.5
2,685,288 + glnB b2553 0.58 -1.1
2,685,311 - glnB b2553 0.65 -0.3
2,685,311 - glnB b2553 0.65 -1.1
2,685,311 - glnB b2553 0.65 -0.2
2,685,311 - glnB b2553 0.65 -0.0
2,685,371 - glnB b2553 0.82 +0.7
2,685,488 + -0.3
2,685,488 + +0.3
2,685,525 - -0.6
2,685,682 + yfhA b2554 0.14 +0.1
2,685,703 + yfhA b2554 0.16 -0.5
2,685,703 + yfhA b2554 0.16 +0.3
2,685,725 + yfhA b2554 0.18 +0.3
2,685,821 - yfhA b2554 0.25 -0.5
2,685,821 - yfhA b2554 0.25 -1.8
2,685,863 - yfhA b2554 0.28 +0.3
2,685,885 - yfhA b2554 0.30 -0.1
2,685,885 - yfhA b2554 0.30 -1.5
2,685,897 - yfhA b2554 0.30 -0.9

Or see this region's nucleotide sequence