Strain Fitness in Pseudomonas simiae WCS417 around PS417_24275

Experiment: Dimethyl Sulfoxide 5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_24265 and PS417_24270 are separated by 158 nucleotidesPS417_24270 and PS417_24275 are separated by 116 nucleotidesPS417_24275 and PS417_24280 are separated by 241 nucleotides PS417_24265: PS417_24265 - ABC transporter ATP-binding protein, at 5,263,417 to 5,265,081 _24265 PS417_24270: PS417_24270 - threonine transporter RhtB, at 5,265,240 to 5,265,851 _24270 PS417_24275: PS417_24275 - diguanylate phosphodiesterase, at 5,265,968 to 5,269,819 _24275 PS417_24280: PS417_24280 - serine hydroxymethyltransferase, at 5,270,061 to 5,271,314 _24280 Position (kb) 5265 5266 5267 5268 5269 5270Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 5265.071 kb on + strandat 5265.072 kb on - strandat 5265.072 kb on - strandat 5265.096 kb on - strandat 5265.096 kb on - strandat 5265.113 kb on + strandat 5265.113 kb on + strandat 5265.114 kb on - strandat 5265.114 kb on - strandat 5265.118 kb on - strandat 5265.134 kb on - strandat 5265.134 kb on - strandat 5265.137 kb on + strandat 5265.138 kb on - strandat 5265.138 kb on - strandat 5265.138 kb on - strandat 5265.138 kb on - strandat 5265.138 kb on - strandat 5265.164 kb on + strandat 5265.164 kb on + strandat 5265.165 kb on - strandat 5265.165 kb on - strandat 5265.188 kb on + strandat 5265.189 kb on - strandat 5265.195 kb on + strandat 5265.196 kb on - strandat 5265.269 kb on - strandat 5265.291 kb on - strandat 5265.305 kb on - strand, within PS417_24270at 5265.373 kb on - strand, within PS417_24270at 5265.469 kb on - strand, within PS417_24270at 5265.469 kb on - strand, within PS417_24270at 5265.486 kb on + strand, within PS417_24270at 5265.486 kb on + strandat 5265.487 kb on - strand, within PS417_24270at 5265.642 kb on + strand, within PS417_24270at 5265.643 kb on - strand, within PS417_24270at 5265.679 kb on + strand, within PS417_24270at 5265.680 kb on - strand, within PS417_24270at 5265.922 kb on - strandat 5265.923 kb on + strandat 5265.924 kb on - strandat 5265.924 kb on - strandat 5265.924 kb on - strandat 5266.009 kb on + strandat 5266.010 kb on - strandat 5266.010 kb on - strandat 5266.010 kb on - strandat 5266.010 kb on - strandat 5266.010 kb on - strandat 5266.010 kb on - strandat 5266.011 kb on + strandat 5266.011 kb on + strandat 5266.011 kb on + strandat 5266.070 kb on - strandat 5266.139 kb on + strandat 5266.139 kb on + strandat 5266.140 kb on - strandat 5266.140 kb on - strandat 5266.140 kb on - strandat 5266.151 kb on + strandat 5266.412 kb on + strand, within PS417_24275at 5266.413 kb on - strand, within PS417_24275at 5266.413 kb on - strand, within PS417_24275at 5266.413 kb on - strand, within PS417_24275at 5266.413 kb on - strand, within PS417_24275at 5266.448 kb on + strandat 5266.448 kb on + strand, within PS417_24275at 5266.448 kb on + strand, within PS417_24275at 5266.449 kb on - strandat 5266.449 kb on - strand, within PS417_24275at 5266.488 kb on - strand, within PS417_24275at 5266.488 kb on - strand, within PS417_24275at 5266.514 kb on + strand, within PS417_24275at 5266.514 kb on + strand, within PS417_24275at 5266.857 kb on - strand, within PS417_24275at 5267.346 kb on + strand, within PS417_24275at 5267.347 kb on - strand, within PS417_24275at 5267.369 kb on + strand, within PS417_24275at 5267.369 kb on + strand, within PS417_24275at 5267.369 kb on + strand, within PS417_24275at 5267.369 kb on + strand, within PS417_24275at 5267.370 kb on - strand, within PS417_24275at 5267.370 kb on - strand, within PS417_24275at 5267.370 kb on - strand, within PS417_24275at 5267.370 kb on - strand, within PS417_24275at 5267.370 kb on - strand, within PS417_24275at 5267.370 kb on - strand, within PS417_24275at 5267.370 kb on - strand, within PS417_24275at 5267.370 kb on - strand, within PS417_24275at 5267.370 kb on - strandat 5267.370 kb on - strand, within PS417_24275at 5267.436 kb on - strand, within PS417_24275at 5267.469 kb on - strand, within PS417_24275at 5267.469 kb on - strand, within PS417_24275at 5267.469 kb on - strand, within PS417_24275at 5267.469 kb on - strand, within PS417_24275at 5267.546 kb on + strand, within PS417_24275at 5267.798 kb on + strand, within PS417_24275at 5267.903 kb on + strand, within PS417_24275at 5267.903 kb on + strandat 5267.904 kb on - strand, within PS417_24275at 5268.090 kb on + strandat 5268.199 kb on + strand, within PS417_24275at 5268.200 kb on - strand, within PS417_24275at 5268.314 kb on + strand, within PS417_24275at 5268.410 kb on - strand, within PS417_24275at 5268.446 kb on + strand, within PS417_24275at 5268.446 kb on + strand, within PS417_24275at 5268.446 kb on + strand, within PS417_24275at 5268.446 kb on + strand, within PS417_24275at 5268.447 kb on - strand, within PS417_24275at 5268.447 kb on - strandat 5268.447 kb on - strand, within PS417_24275at 5268.447 kb on - strand, within PS417_24275at 5268.512 kb on + strand, within PS417_24275at 5268.513 kb on - strand, within PS417_24275at 5268.516 kb on - strand, within PS417_24275at 5268.679 kb on + strand, within PS417_24275at 5268.679 kb on + strand, within PS417_24275at 5268.813 kb on + strand, within PS417_24275at 5268.814 kb on - strand, within PS417_24275at 5268.814 kb on - strand, within PS417_24275at 5268.965 kb on + strand, within PS417_24275at 5268.966 kb on - strand, within PS417_24275at 5269.005 kb on - strand, within PS417_24275at 5269.094 kb on + strand, within PS417_24275at 5269.094 kb on + strand, within PS417_24275at 5269.095 kb on - strand, within PS417_24275at 5269.322 kb on - strand, within PS417_24275at 5269.743 kb on - strandat 5269.995 kb on + strandat 5269.996 kb on - strandat 5269.996 kb on - strandat 5270.004 kb on + strandat 5270.004 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Dimethyl Sulfoxide 5 vol%
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5,265,071 + -1.0
5,265,072 - -1.2
5,265,072 - +0.4
5,265,096 - -0.6
5,265,096 - -0.6
5,265,113 + -2.1
5,265,113 + +1.6
5,265,114 - +0.7
5,265,114 - +0.2
5,265,118 - +0.3
5,265,134 - +0.1
5,265,134 - -0.5
5,265,137 + -1.4
5,265,138 - +1.2
5,265,138 - +0.1
5,265,138 - -0.0
5,265,138 - -0.4
5,265,138 - +0.3
5,265,164 + -0.9
5,265,164 + +0.6
5,265,165 - +0.9
5,265,165 - +0.6
5,265,188 + -4.1
5,265,189 - -0.9
5,265,195 + -0.2
5,265,196 - +1.2
5,265,269 - -0.0
5,265,291 - -0.1
5,265,305 - PS417_24270 0.11 -0.8
5,265,373 - PS417_24270 0.22 +0.5
5,265,469 - PS417_24270 0.37 -0.1
5,265,469 - PS417_24270 0.37 +1.1
5,265,486 + PS417_24270 0.40 -0.7
5,265,486 + +1.1
5,265,487 - PS417_24270 0.40 -0.3
5,265,642 + PS417_24270 0.66 -0.1
5,265,643 - PS417_24270 0.66 +0.3
5,265,679 + PS417_24270 0.72 -0.5
5,265,680 - PS417_24270 0.72 -1.2
5,265,922 - +2.5
5,265,923 + -0.8
5,265,924 - +2.6
5,265,924 - +2.3
5,265,924 - +2.6
5,266,009 + +2.6
5,266,010 - +3.3
5,266,010 - +2.2
5,266,010 - +2.8
5,266,010 - +1.6
5,266,010 - +2.8
5,266,010 - +3.1
5,266,011 + +2.1
5,266,011 + +2.8
5,266,011 + +1.4
5,266,070 - +2.8
5,266,139 + +3.8
5,266,139 + +3.1
5,266,140 - +3.0
5,266,140 - +0.8
5,266,140 - +4.8
5,266,151 + +2.6
5,266,412 + PS417_24275 0.12 +3.4
5,266,413 - PS417_24275 0.12 +2.3
5,266,413 - PS417_24275 0.12 +3.2
5,266,413 - PS417_24275 0.12 +3.2
5,266,413 - PS417_24275 0.12 +2.5
5,266,448 + +0.6
5,266,448 + PS417_24275 0.12 +2.9
5,266,448 + PS417_24275 0.12 +2.4
5,266,449 - +3.8
5,266,449 - PS417_24275 0.12 +3.3
5,266,488 - PS417_24275 0.13 +2.5
5,266,488 - PS417_24275 0.13 +3.1
5,266,514 + PS417_24275 0.14 +0.3
5,266,514 + PS417_24275 0.14 +2.7
5,266,857 - PS417_24275 0.23 +2.7
5,267,346 + PS417_24275 0.36 +2.5
5,267,347 - PS417_24275 0.36 +3.2
5,267,369 + PS417_24275 0.36 +3.5
5,267,369 + PS417_24275 0.36 +4.4
5,267,369 + PS417_24275 0.36 +3.0
5,267,369 + PS417_24275 0.36 +2.8
5,267,370 - PS417_24275 0.36 +3.2
5,267,370 - PS417_24275 0.36 +3.7
5,267,370 - PS417_24275 0.36 +3.2
5,267,370 - PS417_24275 0.36 +3.3
5,267,370 - PS417_24275 0.36 +3.2
5,267,370 - PS417_24275 0.36 +3.4
5,267,370 - PS417_24275 0.36 +3.9
5,267,370 - PS417_24275 0.36 +3.4
5,267,370 - +4.1
5,267,370 - PS417_24275 0.36 +3.5
5,267,436 - PS417_24275 0.38 +3.4
5,267,469 - PS417_24275 0.39 +3.0
5,267,469 - PS417_24275 0.39 +2.9
5,267,469 - PS417_24275 0.39 +2.0
5,267,469 - PS417_24275 0.39 +2.9
5,267,546 + PS417_24275 0.41 +3.0
5,267,798 + PS417_24275 0.48 +2.4
5,267,903 + PS417_24275 0.50 +2.8
5,267,903 + +1.1
5,267,904 - PS417_24275 0.50 +3.1
5,268,090 + +1.9
5,268,199 + PS417_24275 0.58 +0.6
5,268,200 - PS417_24275 0.58 +3.2
5,268,314 + PS417_24275 0.61 +3.0
5,268,410 - PS417_24275 0.63 +3.4
5,268,446 + PS417_24275 0.64 +3.2
5,268,446 + PS417_24275 0.64 +2.9
5,268,446 + PS417_24275 0.64 +3.0
5,268,446 + PS417_24275 0.64 +3.4
5,268,447 - PS417_24275 0.64 +2.9
5,268,447 - +3.9
5,268,447 - PS417_24275 0.64 +3.0
5,268,447 - PS417_24275 0.64 +3.1
5,268,512 + PS417_24275 0.66 +3.3
5,268,513 - PS417_24275 0.66 +2.8
5,268,516 - PS417_24275 0.66 +3.0
5,268,679 + PS417_24275 0.70 +2.6
5,268,679 + PS417_24275 0.70 +2.9
5,268,813 + PS417_24275 0.74 +1.7
5,268,814 - PS417_24275 0.74 +3.2
5,268,814 - PS417_24275 0.74 +3.5
5,268,965 + PS417_24275 0.78 +2.3
5,268,966 - PS417_24275 0.78 +2.9
5,269,005 - PS417_24275 0.79 +3.3
5,269,094 + PS417_24275 0.81 -0.5
5,269,094 + PS417_24275 0.81 +0.1
5,269,095 - PS417_24275 0.81 -0.3
5,269,322 - PS417_24275 0.87 +2.0
5,269,743 - +1.7
5,269,995 + -0.2
5,269,996 - -0.7
5,269,996 - +0.5
5,270,004 + -0.1
5,270,004 + +0.3

Or see this region's nucleotide sequence