Experiment: Dimethyl Sulfoxide 5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_19950 and PS417_19955 are separated by 266 nucleotides PS417_19955 and PS417_19960 are separated by 20 nucleotides PS417_19960 and PS417_19965 are separated by 114 nucleotides
PS417_19950: PS417_19950 - ATP-dependent DNA helicase RecQ, at 4,331,018 to 4,333,144
_19950
PS417_19955: PS417_19955 - hypothetical protein, at 4,333,411 to 4,333,998
_19955
PS417_19960: PS417_19960 - membrane protein, at 4,334,019 to 4,334,402
_19960
PS417_19965: PS417_19965 - histidine kinase, at 4,334,517 to 4,337,987
_19965
Position (kb) 4334
4335 Strain fitness (log2 ratio) -1
0
1
2
3 at 4333.280 kb on + strand at 4333.281 kb on - strand at 4333.334 kb on + strand at 4333.334 kb on + strand at 4333.373 kb on + strand at 4333.402 kb on - strand at 4333.486 kb on + strand, within PS417_19955 at 4333.504 kb on + strand, within PS417_19955 at 4333.940 kb on - strand at 4334.132 kb on - strand, within PS417_19960 at 4334.176 kb on - strand, within PS417_19960 at 4334.223 kb on + strand, within PS417_19960 at 4334.263 kb on - strand, within PS417_19960 at 4334.363 kb on + strand, within PS417_19960 at 4334.363 kb on + strand, within PS417_19960 at 4334.363 kb on + strand, within PS417_19960 at 4334.364 kb on - strand at 4334.364 kb on - strand at 4334.367 kb on + strand at 4334.367 kb on + strand at 4334.367 kb on + strand at 4334.368 kb on - strand at 4334.368 kb on - strand at 4334.368 kb on - strand at 4334.368 kb on - strand at 4334.368 kb on - strand at 4334.501 kb on + strand at 4334.501 kb on + strand at 4334.502 kb on - strand at 4334.502 kb on - strand at 4334.559 kb on + strand at 4334.559 kb on + strand at 4334.559 kb on + strand at 4334.560 kb on - strand at 4334.560 kb on - strand at 4334.571 kb on - strand at 4334.641 kb on - strand at 4334.641 kb on - strand at 4334.641 kb on - strand at 4334.661 kb on + strand at 4334.661 kb on + strand at 4334.661 kb on + strand at 4334.661 kb on + strand at 4334.662 kb on - strand at 4334.831 kb on + strand at 4334.832 kb on - strand at 4334.907 kb on + strand, within PS417_19965 at 4334.907 kb on + strand, within PS417_19965 at 4334.908 kb on - strand, within PS417_19965 at 4334.908 kb on - strand, within PS417_19965 at 4334.908 kb on - strand, within PS417_19965 at 4335.156 kb on + strand, within PS417_19965 at 4335.166 kb on - strand, within PS417_19965 at 4335.223 kb on - strand, within PS417_19965 at 4335.260 kb on - strand, within PS417_19965 at 4335.288 kb on - strand, within PS417_19965 at 4335.375 kb on + strand, within PS417_19965
Per-strain Table
Position Strand Gene LocusTag Fraction Dimethyl Sulfoxide 5 vol% remove 4,333,280 + -0.6 4,333,281 - +0.3 4,333,334 + +0.2 4,333,334 + -0.3 4,333,373 + -0.1 4,333,402 - -0.4 4,333,486 + PS417_19955 0.13 +0.1 4,333,504 + PS417_19955 0.16 -0.3 4,333,940 - -0.3 4,334,132 - PS417_19960 0.29 +0.6 4,334,176 - PS417_19960 0.41 -0.9 4,334,223 + PS417_19960 0.53 +0.3 4,334,263 - PS417_19960 0.64 -0.5 4,334,363 + PS417_19960 0.90 -0.7 4,334,363 + PS417_19960 0.90 +0.3 4,334,363 + PS417_19960 0.90 +3.7 4,334,364 - +0.9 4,334,364 - -0.4 4,334,367 + -0.1 4,334,367 + -0.1 4,334,367 + -0.3 4,334,368 - +0.5 4,334,368 - -0.4 4,334,368 - -1.1 4,334,368 - +0.4 4,334,368 - -0.2 4,334,501 + +0.5 4,334,501 + -0.4 4,334,502 - -0.1 4,334,502 - +1.2 4,334,559 + -0.1 4,334,559 + +0.0 4,334,559 + +0.2 4,334,560 - -0.2 4,334,560 - +0.2 4,334,571 - +0.3 4,334,641 - +0.1 4,334,641 - +1.1 4,334,641 - +0.1 4,334,661 + +0.9 4,334,661 + +0.5 4,334,661 + +0.6 4,334,661 + -0.4 4,334,662 - -0.2 4,334,831 + +1.2 4,334,832 - +0.4 4,334,907 + PS417_19965 0.11 +0.6 4,334,907 + PS417_19965 0.11 +0.2 4,334,908 - PS417_19965 0.11 +0.3 4,334,908 - PS417_19965 0.11 +0.2 4,334,908 - PS417_19965 0.11 +1.7 4,335,156 + PS417_19965 0.18 +0.3 4,335,166 - PS417_19965 0.19 -0.1 4,335,223 - PS417_19965 0.20 -0.8 4,335,260 - PS417_19965 0.21 -0.3 4,335,288 - PS417_19965 0.22 -0.4 4,335,375 + PS417_19965 0.25 -0.1
Or see this region's nucleotide sequence