Experiment: Dimethyl Sulfoxide 5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_15090 and PS417_15095 overlap by 4 nucleotides PS417_15095 and PS417_15100 overlap by 8 nucleotides PS417_15100 and PS417_15105 overlap by 4 nucleotides
PS417_15090: PS417_15090 - hypothetical protein, at 3,300,256 to 3,301,188
_15090
PS417_15095: PS417_15095 - hypothetical protein, at 3,301,185 to 3,301,679
_15095
PS417_15100: PS417_15100 - BatB protein, at 3,301,672 to 3,302,760
_15100
PS417_15105: PS417_15105 - membrane protein, at 3,302,757 to 3,304,496
_15105
Position (kb)
3301
3302
3303 Strain fitness (log2 ratio)
-2
-1
0
1 at 3301.039 kb on + strand, within PS417_15090 at 3301.039 kb on + strand, within PS417_15090 at 3301.492 kb on - strand, within PS417_15095 at 3301.580 kb on - strand, within PS417_15095 at 3301.586 kb on - strand, within PS417_15095 at 3301.780 kb on + strand at 3302.108 kb on - strand, within PS417_15100 at 3302.350 kb on + strand, within PS417_15100 at 3302.473 kb on + strand, within PS417_15100 at 3303.121 kb on + strand, within PS417_15105 at 3303.121 kb on + strand, within PS417_15105 at 3303.121 kb on + strand, within PS417_15105 at 3303.121 kb on + strand, within PS417_15105 at 3303.122 kb on - strand, within PS417_15105 at 3303.122 kb on - strand at 3303.122 kb on - strand, within PS417_15105 at 3303.122 kb on - strand, within PS417_15105 at 3303.123 kb on + strand, within PS417_15105 at 3303.123 kb on + strand, within PS417_15105 at 3303.344 kb on - strand, within PS417_15105 at 3303.712 kb on + strand, within PS417_15105
Per-strain Table
Position Strand Gene LocusTag Fraction Dimethyl Sulfoxide 5 vol% remove 3,301,039 + PS417_15090 0.84 +1.3 3,301,039 + PS417_15090 0.84 -0.9 3,301,492 - PS417_15095 0.62 -0.3 3,301,580 - PS417_15095 0.80 +0.8 3,301,586 - PS417_15095 0.81 -0.4 3,301,780 + -0.7 3,302,108 - PS417_15100 0.40 -0.2 3,302,350 + PS417_15100 0.62 -0.1 3,302,473 + PS417_15100 0.74 -1.9 3,303,121 + PS417_15105 0.21 -1.1 3,303,121 + PS417_15105 0.21 -1.0 3,303,121 + PS417_15105 0.21 -1.6 3,303,121 + PS417_15105 0.21 -1.6 3,303,122 - PS417_15105 0.21 -0.8 3,303,122 - -0.8 3,303,122 - PS417_15105 0.21 -1.2 3,303,122 - PS417_15105 0.21 +0.4 3,303,123 + PS417_15105 0.21 -0.8 3,303,123 + PS417_15105 0.21 -0.8 3,303,344 - PS417_15105 0.34 -0.7 3,303,712 + PS417_15105 0.55 +1.0
Or see this region's nucleotide sequence