Experiment: Dimethyl Sulfoxide 5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01385 and PS417_01390 are separated by 62 nucleotides PS417_01390 and PS417_01395 overlap by 23 nucleotides
PS417_01385: PS417_01385 - NAD-dependent dehydratase, at 302,396 to 303,328
_01385
PS417_01390: PS417_01390 - PbsX family transcriptional regulator, at 303,391 to 306,204
_01390
PS417_01395: PS417_01395 - biofilm formation protein PelB, at 306,182 to 309,781
_01395
Position (kb) 303
304
305
306
307 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 302.404 kb on - strand at 302.438 kb on - strand at 302.477 kb on + strand at 302.512 kb on + strand, within PS417_01385 at 302.832 kb on - strand, within PS417_01385 at 302.859 kb on - strand, within PS417_01385 at 302.859 kb on - strand at 302.861 kb on + strand, within PS417_01385 at 302.874 kb on - strand, within PS417_01385 at 303.007 kb on + strand, within PS417_01385 at 303.008 kb on - strand, within PS417_01385 at 303.048 kb on - strand, within PS417_01385 at 303.120 kb on + strand, within PS417_01385 at 303.201 kb on - strand, within PS417_01385 at 303.245 kb on - strand at 303.326 kb on + strand at 303.326 kb on + strand at 303.326 kb on + strand at 303.354 kb on + strand at 303.354 kb on + strand at 303.355 kb on - strand at 303.362 kb on - strand at 303.386 kb on - strand at 303.495 kb on - strand at 303.643 kb on + strand at 303.644 kb on - strand at 303.817 kb on + strand, within PS417_01390 at 304.139 kb on - strand, within PS417_01390 at 304.351 kb on + strand, within PS417_01390 at 304.351 kb on + strand, within PS417_01390 at 304.352 kb on - strand, within PS417_01390 at 304.352 kb on - strand, within PS417_01390 at 304.403 kb on - strand, within PS417_01390 at 304.420 kb on + strand, within PS417_01390 at 304.421 kb on - strand, within PS417_01390 at 304.421 kb on - strand, within PS417_01390 at 304.799 kb on - strand, within PS417_01390 at 305.011 kb on + strand at 305.012 kb on - strand, within PS417_01390 at 305.136 kb on + strand, within PS417_01390 at 305.504 kb on - strand at 305.504 kb on - strand, within PS417_01390 at 305.507 kb on - strand, within PS417_01390 at 305.557 kb on + strand, within PS417_01390 at 305.558 kb on - strand, within PS417_01390 at 305.636 kb on - strand, within PS417_01390 at 305.689 kb on + strand, within PS417_01390 at 305.690 kb on - strand, within PS417_01390 at 305.738 kb on - strand, within PS417_01390 at 305.738 kb on - strand, within PS417_01390 at 305.762 kb on - strand, within PS417_01390 at 305.915 kb on - strand, within PS417_01390 at 306.202 kb on + strand at 306.203 kb on - strand at 306.338 kb on + strand at 306.338 kb on + strand at 306.339 kb on - strand at 306.339 kb on - strand at 306.349 kb on - strand at 306.482 kb on + strand at 306.694 kb on + strand, within PS417_01395 at 306.707 kb on - strand, within PS417_01395 at 306.764 kb on + strand, within PS417_01395 at 306.764 kb on + strand, within PS417_01395 at 306.765 kb on - strand, within PS417_01395 at 306.765 kb on - strand, within PS417_01395 at 306.775 kb on + strand, within PS417_01395 at 306.775 kb on + strand, within PS417_01395 at 306.776 kb on - strand, within PS417_01395 at 307.047 kb on + strand, within PS417_01395 at 307.047 kb on + strand, within PS417_01395 at 307.047 kb on + strand, within PS417_01395 at 307.048 kb on - strand, within PS417_01395 at 307.048 kb on - strand, within PS417_01395 at 307.048 kb on - strand, within PS417_01395 at 307.057 kb on + strand, within PS417_01395
Per-strain Table
Position Strand Gene LocusTag Fraction Dimethyl Sulfoxide 5 vol% remove 302,404 - +3.4 302,438 - +3.4 302,477 + +2.2 302,512 + PS417_01385 0.12 +2.6 302,832 - PS417_01385 0.47 +2.3 302,859 - PS417_01385 0.50 +3.1 302,859 - +1.4 302,861 + PS417_01385 0.50 -0.1 302,874 - PS417_01385 0.51 +1.7 303,007 + PS417_01385 0.65 -0.7 303,008 - PS417_01385 0.66 +3.0 303,048 - PS417_01385 0.70 +3.0 303,120 + PS417_01385 0.78 -0.9 303,201 - PS417_01385 0.86 +1.8 303,245 - +2.9 303,326 + -0.1 303,326 + -0.5 303,326 + -2.3 303,354 + -3.2 303,354 + -0.9 303,355 - +2.9 303,362 - +2.9 303,386 - +2.4 303,495 - +3.1 303,643 + -0.5 303,644 - +3.2 303,817 + PS417_01390 0.15 +2.9 304,139 - PS417_01390 0.27 +1.4 304,351 + PS417_01390 0.34 +2.6 304,351 + PS417_01390 0.34 +2.7 304,352 - PS417_01390 0.34 +2.7 304,352 - PS417_01390 0.34 +3.4 304,403 - PS417_01390 0.36 +3.0 304,420 + PS417_01390 0.37 +2.5 304,421 - PS417_01390 0.37 +2.8 304,421 - PS417_01390 0.37 +3.4 304,799 - PS417_01390 0.50 +2.9 305,011 + +2.1 305,012 - PS417_01390 0.58 +3.1 305,136 + PS417_01390 0.62 +3.6 305,504 - -0.1 305,504 - PS417_01390 0.75 +3.4 305,507 - PS417_01390 0.75 +2.1 305,557 + PS417_01390 0.77 +2.8 305,558 - PS417_01390 0.77 +3.1 305,636 - PS417_01390 0.80 +2.9 305,689 + PS417_01390 0.82 +2.1 305,690 - PS417_01390 0.82 +3.2 305,738 - PS417_01390 0.83 +3.6 305,738 - PS417_01390 0.83 +3.3 305,762 - PS417_01390 0.84 +3.0 305,915 - PS417_01390 0.90 +3.0 306,202 + +2.6 306,203 - +3.2 306,338 + +3.2 306,338 + +3.0 306,339 - +2.6 306,339 - +3.1 306,349 - +3.4 306,482 + +3.3 306,694 + PS417_01395 0.14 +3.4 306,707 - PS417_01395 0.15 +3.3 306,764 + PS417_01395 0.16 +3.1 306,764 + PS417_01395 0.16 +1.8 306,765 - PS417_01395 0.16 +3.4 306,765 - PS417_01395 0.16 +2.8 306,775 + PS417_01395 0.16 +2.2 306,775 + PS417_01395 0.16 +3.4 306,776 - PS417_01395 0.17 +3.0 307,047 + PS417_01395 0.24 +2.7 307,047 + PS417_01395 0.24 +3.3 307,047 + PS417_01395 0.24 +2.8 307,048 - PS417_01395 0.24 +4.0 307,048 - PS417_01395 0.24 +3.1 307,048 - PS417_01395 0.24 +3.0 307,057 + PS417_01395 0.24 +3.1
Or see this region's nucleotide sequence