Strain Fitness in Pseudomonas simiae WCS417 around PS417_11350
Experiment: Dimethyl Sulfoxide 5 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Dimethyl Sulfoxide 5 vol% |
---|---|---|---|---|---|
remove | |||||
2,443,934 | - | PS417_11345 | 0.40 | +0.1 | |
2,444,450 | - | +0.8 | |||
2,444,656 | + | PS417_11345 | 0.85 | -0.8 | |
2,444,656 | + | PS417_11345 | 0.85 | -0.0 | |
2,444,657 | - | PS417_11345 | 0.85 | -0.3 | |
2,444,657 | - | PS417_11345 | 0.85 | +1.0 | |
2,445,271 | + | PS417_11350 | 0.20 | -1.4 | |
2,445,272 | - | PS417_11350 | 0.20 | -1.8 | |
2,445,272 | - | PS417_11350 | 0.20 | -2.2 | |
2,445,272 | - | PS417_11350 | 0.20 | -0.3 | |
2,445,331 | + | PS417_11350 | 0.23 | +0.2 | |
2,446,169 | - | PS417_11350 | 0.70 | -1.1 | |
2,447,038 | + | -0.8 | |||
2,447,039 | - | PS417_11355 | 0.74 | +0.1 | |
2,447,596 | - | PS417_11360 | 0.63 | +0.2 | |
2,447,598 | - | PS417_11360 | 0.63 | +0.3 | |
2,447,619 | + | PS417_11360 | 0.66 | +0.0 |
Or see this region's nucleotide sequence