Experiment: Kang_ML4_MIT diversity barseq
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_0892 and B158DRAFT_0893 are separated by 47 nucleotides B158DRAFT_0893 and B158DRAFT_0894 are separated by 48 nucleotides B158DRAFT_0894 and B158DRAFT_0895 are separated by 46 nucleotides
B158DRAFT_0892: B158DRAFT_0892 - phosphate ABC transporter membrane protein 2, PhoT family (TC 3.A.1.7.1), at 913,568 to 915,175
_0892
B158DRAFT_0893: B158DRAFT_0893 - phosphate ABC transporter ATP-binding protein, PhoT family (TC 3.A.1.7.1), at 915,223 to 916,074
_0893
B158DRAFT_0894: B158DRAFT_0894 - phosphate uptake regulator, PhoU, at 916,123 to 916,854
_0894
B158DRAFT_0895: B158DRAFT_0895 - phosphate regulon transcriptional regulatory protein PhoB, at 916,901 to 917,593
_0895
Position (kb) 915
916
917 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 914.230 kb on + strand, within B158DRAFT_0892 at 914.238 kb on - strand, within B158DRAFT_0892 at 914.598 kb on + strand, within B158DRAFT_0892 at 914.652 kb on - strand, within B158DRAFT_0892 at 914.656 kb on + strand, within B158DRAFT_0892 at 914.664 kb on - strand, within B158DRAFT_0892 at 914.717 kb on + strand, within B158DRAFT_0892 at 914.725 kb on - strand, within B158DRAFT_0892 at 914.725 kb on - strand, within B158DRAFT_0892 at 915.048 kb on - strand at 915.080 kb on + strand at 915.080 kb on + strand at 915.162 kb on - strand at 915.206 kb on + strand at 915.206 kb on + strand at 915.508 kb on + strand, within B158DRAFT_0893 at 915.707 kb on + strand, within B158DRAFT_0893 at 915.712 kb on + strand, within B158DRAFT_0893 at 916.077 kb on - strand at 916.079 kb on + strand at 916.087 kb on - strand at 916.092 kb on - strand at 916.154 kb on + strand at 916.164 kb on + strand at 916.172 kb on - strand at 916.172 kb on - strand at 916.172 kb on - strand at 916.172 kb on - strand at 916.172 kb on - strand at 916.509 kb on + strand, within B158DRAFT_0894 at 916.546 kb on + strand, within B158DRAFT_0894 at 916.573 kb on + strand, within B158DRAFT_0894 at 916.587 kb on - strand, within B158DRAFT_0894 at 916.588 kb on + strand, within B158DRAFT_0894 at 916.588 kb on + strand, within B158DRAFT_0894 at 916.588 kb on + strand, within B158DRAFT_0894 at 916.697 kb on + strand, within B158DRAFT_0894
Per-strain Table
Position Strand Gene LocusTag Fraction Kang_ML4_MIT diversity barseq remove 914,230 + B158DRAFT_0892 0.41 +1.8 914,238 - B158DRAFT_0892 0.42 +0.4 914,598 + B158DRAFT_0892 0.64 +0.4 914,652 - B158DRAFT_0892 0.67 +0.0 914,656 + B158DRAFT_0892 0.68 -0.8 914,664 - B158DRAFT_0892 0.68 -0.6 914,717 + B158DRAFT_0892 0.71 +0.4 914,725 - B158DRAFT_0892 0.72 +1.0 914,725 - B158DRAFT_0892 0.72 +0.8 915,048 - +0.6 915,080 + +0.0 915,080 + +1.0 915,162 - +0.6 915,206 + +0.1 915,206 + -0.4 915,508 + B158DRAFT_0893 0.33 +0.2 915,707 + B158DRAFT_0893 0.57 -2.3 915,712 + B158DRAFT_0893 0.57 +1.0 916,077 - -0.2 916,079 + +0.2 916,087 - -1.0 916,092 - +1.0 916,154 + +0.1 916,164 + +0.2 916,172 - +3.3 916,172 - +0.4 916,172 - -1.3 916,172 - +0.0 916,172 - +0.9 916,509 + B158DRAFT_0894 0.53 +2.3 916,546 + B158DRAFT_0894 0.58 +1.4 916,573 + B158DRAFT_0894 0.61 +1.4 916,587 - B158DRAFT_0894 0.63 +0.7 916,588 + B158DRAFT_0894 0.64 +1.0 916,588 + B158DRAFT_0894 0.64 +1.0 916,588 + B158DRAFT_0894 0.64 +2.2 916,697 + B158DRAFT_0894 0.78 +2.0
Or see this region's nucleotide sequence