Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0486

Experiment: Kang_ML4_MIT diversity barseq

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_0483 and B158DRAFT_0484 are separated by 34 nucleotidesB158DRAFT_0484 and B158DRAFT_0485 are separated by 79 nucleotidesB158DRAFT_0485 and B158DRAFT_0486 are separated by 0 nucleotidesB158DRAFT_0486 and B158DRAFT_0487 are separated by 37 nucleotidesB158DRAFT_0487 and B158DRAFT_0488 are separated by 74 nucleotidesB158DRAFT_0488 and B158DRAFT_0489 are separated by 60 nucleotides B158DRAFT_0483: B158DRAFT_0483 - hypothetical protein, at 485,400 to 485,768 _0483 B158DRAFT_0484: B158DRAFT_0484 - Protein of unknown function (DUF3478)., at 485,803 to 486,171 _0484 B158DRAFT_0485: B158DRAFT_0485 - Periplasmic protease, at 486,251 to 486,607 _0485 B158DRAFT_0486: B158DRAFT_0486 - iron-sulfur cluster binding protein, putative, at 486,608 to 487,756 _0486 B158DRAFT_0487: B158DRAFT_0487 - Cytochrome c5, at 487,794 to 488,108 _0487 B158DRAFT_0488: B158DRAFT_0488 - Cytochrome c5, at 488,183 to 488,623 _0488 B158DRAFT_0489: B158DRAFT_0489 - uncharacterized domain 1, at 488,684 to 489,307 _0489 Position (kb) 486 487 488Strain fitness (log2 ratio) -1 0 1 2at 485.693 kb on - strand, within B158DRAFT_0483at 485.801 kb on - strandat 486.018 kb on + strand, within B158DRAFT_0484at 486.018 kb on + strand, within B158DRAFT_0484at 486.018 kb on + strand, within B158DRAFT_0484at 486.026 kb on - strand, within B158DRAFT_0484at 486.386 kb on + strand, within B158DRAFT_0485at 486.386 kb on + strand, within B158DRAFT_0485at 486.431 kb on - strand, within B158DRAFT_0485at 486.443 kb on - strand, within B158DRAFT_0485at 486.477 kb on + strand, within B158DRAFT_0485at 486.499 kb on - strand, within B158DRAFT_0485at 486.558 kb on - strand, within B158DRAFT_0485at 486.762 kb on + strand, within B158DRAFT_0486at 486.855 kb on + strand, within B158DRAFT_0486at 486.889 kb on - strand, within B158DRAFT_0486at 486.889 kb on - strand, within B158DRAFT_0486at 486.897 kb on - strand, within B158DRAFT_0486at 486.902 kb on - strand, within B158DRAFT_0486at 486.926 kb on - strand, within B158DRAFT_0486at 486.926 kb on - strand, within B158DRAFT_0486at 486.984 kb on + strand, within B158DRAFT_0486at 487.044 kb on - strand, within B158DRAFT_0486at 487.141 kb on + strand, within B158DRAFT_0486at 487.141 kb on + strand, within B158DRAFT_0486at 487.149 kb on - strand, within B158DRAFT_0486at 487.173 kb on + strand, within B158DRAFT_0486at 487.181 kb on - strand, within B158DRAFT_0486at 487.265 kb on + strand, within B158DRAFT_0486at 487.285 kb on + strand, within B158DRAFT_0486at 487.376 kb on + strand, within B158DRAFT_0486at 487.433 kb on + strand, within B158DRAFT_0486at 487.541 kb on - strand, within B158DRAFT_0486at 487.618 kb on + strand, within B158DRAFT_0486at 487.630 kb on + strand, within B158DRAFT_0486at 487.647 kb on - strandat 487.672 kb on - strandat 487.680 kb on - strandat 487.769 kb on + strandat 487.818 kb on + strandat 487.818 kb on + strandat 487.818 kb on + strandat 487.820 kb on - strandat 487.826 kb on - strand, within B158DRAFT_0487at 487.864 kb on + strand, within B158DRAFT_0487at 487.864 kb on + strand, within B158DRAFT_0487at 487.864 kb on + strand, within B158DRAFT_0487at 487.872 kb on - strand, within B158DRAFT_0487at 487.872 kb on - strand, within B158DRAFT_0487at 487.872 kb on - strand, within B158DRAFT_0487at 487.887 kb on - strand, within B158DRAFT_0487at 487.929 kb on - strand, within B158DRAFT_0487at 487.954 kb on - strand, within B158DRAFT_0487at 487.970 kb on - strand, within B158DRAFT_0487at 487.970 kb on - strand, within B158DRAFT_0487at 488.032 kb on - strand, within B158DRAFT_0487at 488.042 kb on + strand, within B158DRAFT_0487at 488.042 kb on + strand, within B158DRAFT_0487at 488.050 kb on - strand, within B158DRAFT_0487at 488.096 kb on - strandat 488.168 kb on + strandat 488.173 kb on + strandat 488.239 kb on + strand, within B158DRAFT_0488at 488.243 kb on - strand, within B158DRAFT_0488at 488.299 kb on - strand, within B158DRAFT_0488at 488.312 kb on - strand, within B158DRAFT_0488at 488.322 kb on + strand, within B158DRAFT_0488at 488.322 kb on + strand, within B158DRAFT_0488at 488.397 kb on + strand, within B158DRAFT_0488at 488.410 kb on + strand, within B158DRAFT_0488at 488.410 kb on + strand, within B158DRAFT_0488at 488.418 kb on - strand, within B158DRAFT_0488at 488.418 kb on - strand, within B158DRAFT_0488at 488.508 kb on + strand, within B158DRAFT_0488at 488.516 kb on - strand, within B158DRAFT_0488at 488.516 kb on - strand, within B158DRAFT_0488at 488.516 kb on - strand, within B158DRAFT_0488at 488.545 kb on + strand, within B158DRAFT_0488at 488.619 kb on + strandat 488.637 kb on + strandat 488.637 kb on + strandat 488.637 kb on + strandat 488.637 kb on + strandat 488.637 kb on + strandat 488.645 kb on - strandat 488.645 kb on - strandat 488.645 kb on - strandat 488.645 kb on - strandat 488.645 kb on - strandat 488.645 kb on - strandat 488.645 kb on - strandat 488.652 kb on - strandat 488.654 kb on + strandat 488.692 kb on + strandat 488.700 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Kang_ML4_MIT diversity barseq
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485,693 - B158DRAFT_0483 0.79 +0.7
485,801 - -0.1
486,018 + B158DRAFT_0484 0.58 -0.7
486,018 + B158DRAFT_0484 0.58 +1.2
486,018 + B158DRAFT_0484 0.58 -0.4
486,026 - B158DRAFT_0484 0.60 -0.5
486,386 + B158DRAFT_0485 0.38 +0.7
486,386 + B158DRAFT_0485 0.38 -0.2
486,431 - B158DRAFT_0485 0.50 +0.2
486,443 - B158DRAFT_0485 0.54 +0.6
486,477 + B158DRAFT_0485 0.63 +0.2
486,499 - B158DRAFT_0485 0.69 -0.3
486,558 - B158DRAFT_0485 0.86 -0.5
486,762 + B158DRAFT_0486 0.13 -0.0
486,855 + B158DRAFT_0486 0.21 +0.1
486,889 - B158DRAFT_0486 0.24 -0.3
486,889 - B158DRAFT_0486 0.24 +0.5
486,897 - B158DRAFT_0486 0.25 +0.2
486,902 - B158DRAFT_0486 0.26 +0.8
486,926 - B158DRAFT_0486 0.28 +0.0
486,926 - B158DRAFT_0486 0.28 -0.6
486,984 + B158DRAFT_0486 0.33 -0.3
487,044 - B158DRAFT_0486 0.38 +0.6
487,141 + B158DRAFT_0486 0.46 +0.2
487,141 + B158DRAFT_0486 0.46 -1.6
487,149 - B158DRAFT_0486 0.47 -0.0
487,173 + B158DRAFT_0486 0.49 -0.1
487,181 - B158DRAFT_0486 0.50 -0.3
487,265 + B158DRAFT_0486 0.57 +0.8
487,285 + B158DRAFT_0486 0.59 -0.5
487,376 + B158DRAFT_0486 0.67 -0.6
487,433 + B158DRAFT_0486 0.72 -0.2
487,541 - B158DRAFT_0486 0.81 -0.2
487,618 + B158DRAFT_0486 0.88 +0.8
487,630 + B158DRAFT_0486 0.89 -0.4
487,647 - -0.5
487,672 - -0.5
487,680 - +0.6
487,769 + -0.2
487,818 + +1.0
487,818 + +1.0
487,818 + +2.0
487,820 - +0.8
487,826 - B158DRAFT_0487 0.10 +1.8
487,864 + B158DRAFT_0487 0.22 +2.0
487,864 + B158DRAFT_0487 0.22 +1.0
487,864 + B158DRAFT_0487 0.22 -0.0
487,872 - B158DRAFT_0487 0.25 +2.2
487,872 - B158DRAFT_0487 0.25 +2.6
487,872 - B158DRAFT_0487 0.25 -0.0
487,887 - B158DRAFT_0487 0.30 +1.6
487,929 - B158DRAFT_0487 0.43 +1.6
487,954 - B158DRAFT_0487 0.51 +0.6
487,970 - B158DRAFT_0487 0.56 +1.9
487,970 - B158DRAFT_0487 0.56 -0.0
488,032 - B158DRAFT_0487 0.76 -0.6
488,042 + B158DRAFT_0487 0.79 +2.0
488,042 + B158DRAFT_0487 0.79 +0.4
488,050 - B158DRAFT_0487 0.81 -0.0
488,096 - +0.4
488,168 + +1.6
488,173 + +1.0
488,239 + B158DRAFT_0488 0.13 +1.0
488,243 - B158DRAFT_0488 0.14 +0.4
488,299 - B158DRAFT_0488 0.26 +2.6
488,312 - B158DRAFT_0488 0.29 +1.3
488,322 + B158DRAFT_0488 0.32 +2.3
488,322 + B158DRAFT_0488 0.32 +1.0
488,397 + B158DRAFT_0488 0.49 +1.4
488,410 + B158DRAFT_0488 0.51 +1.6
488,410 + B158DRAFT_0488 0.51 +0.3
488,418 - B158DRAFT_0488 0.53 +0.6
488,418 - B158DRAFT_0488 0.53 +1.0
488,508 + B158DRAFT_0488 0.74 +1.0
488,516 - B158DRAFT_0488 0.76 +2.0
488,516 - B158DRAFT_0488 0.76 +0.4
488,516 - B158DRAFT_0488 0.76 +1.0
488,545 + B158DRAFT_0488 0.82 +0.6
488,619 + +0.6
488,637 + +2.0
488,637 + -0.6
488,637 + +2.3
488,637 + +2.3
488,637 + +0.6
488,645 - +1.2
488,645 - +2.0
488,645 - +0.7
488,645 - +0.6
488,645 - +0.7
488,645 - -0.9
488,645 - -0.0
488,652 - +1.7
488,654 + +2.6
488,692 + -0.0
488,700 - -0.9

Or see this region's nucleotide sequence