Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF494

Experiment: LB_plus_SM_buffer with EIP16_phage 0.0875 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF493 and GFF494 are separated by 173 nucleotidesGFF494 and GFF495 are separated by 157 nucleotides GFF493 - Cellulose synthase operon protein C, at 215,732 to 219,184 GFF493 GFF494 - Protein yhjK, at 219,358 to 221,364 GFF494 GFF495 - Aerobic C4-dicarboxylate transporter for fumarate, L-malate, D-malate, succunate, at 221,522 to 222,808 GFF495 Position (kb) 219 220 221 222Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 218.378 kb on - strand, within GFF493at 218.408 kb on + strand, within GFF493at 218.408 kb on + strand, within GFF493at 218.409 kb on - strand, within GFF493at 218.436 kb on - strand, within GFF493at 218.634 kb on + strand, within GFF493at 218.672 kb on + strand, within GFF493at 218.672 kb on + strand, within GFF493at 218.672 kb on + strand, within GFF493at 218.672 kb on + strand, within GFF493at 218.672 kb on + strand, within GFF493at 218.675 kb on + strand, within GFF493at 218.675 kb on + strand, within GFF493at 218.675 kb on + strand, within GFF493at 218.675 kb on + strand, within GFF493at 218.676 kb on - strand, within GFF493at 218.676 kb on - strand, within GFF493at 218.676 kb on - strand, within GFF493at 218.678 kb on - strand, within GFF493at 218.781 kb on - strand, within GFF493at 218.783 kb on + strand, within GFF493at 218.783 kb on + strand, within GFF493at 218.786 kb on - strand, within GFF493at 218.799 kb on - strand, within GFF493at 218.836 kb on + strand, within GFF493at 218.859 kb on + strandat 219.081 kb on - strandat 219.104 kb on + strandat 219.182 kb on + strandat 219.286 kb on + strandat 219.286 kb on + strandat 219.319 kb on + strandat 219.385 kb on - strandat 219.476 kb on - strandat 219.582 kb on + strand, within GFF494at 219.582 kb on + strand, within GFF494at 219.583 kb on - strand, within GFF494at 219.585 kb on + strand, within GFF494at 219.620 kb on + strand, within GFF494at 219.770 kb on - strand, within GFF494at 219.777 kb on - strand, within GFF494at 219.802 kb on + strand, within GFF494at 219.802 kb on + strand, within GFF494at 219.844 kb on + strand, within GFF494at 219.849 kb on - strand, within GFF494at 219.890 kb on + strand, within GFF494at 220.027 kb on + strand, within GFF494at 220.027 kb on + strand, within GFF494at 220.028 kb on - strand, within GFF494at 220.028 kb on - strand, within GFF494at 220.048 kb on - strand, within GFF494at 220.113 kb on + strand, within GFF494at 220.146 kb on + strand, within GFF494at 220.297 kb on - strand, within GFF494at 220.367 kb on + strand, within GFF494at 220.368 kb on - strand, within GFF494at 220.379 kb on + strand, within GFF494at 220.379 kb on + strand, within GFF494at 220.387 kb on - strand, within GFF494at 220.456 kb on + strand, within GFF494at 220.456 kb on + strand, within GFF494at 220.456 kb on + strand, within GFF494at 220.457 kb on - strand, within GFF494at 220.457 kb on - strand, within GFF494at 220.457 kb on - strand, within GFF494at 220.460 kb on - strand, within GFF494at 220.486 kb on + strand, within GFF494at 220.701 kb on + strand, within GFF494at 220.702 kb on - strand, within GFF494at 220.702 kb on - strand, within GFF494at 220.702 kb on - strand, within GFF494at 220.702 kb on - strand, within GFF494at 221.005 kb on - strand, within GFF494at 221.009 kb on + strand, within GFF494at 221.009 kb on + strand, within GFF494at 221.019 kb on - strand, within GFF494at 221.066 kb on - strand, within GFF494at 221.085 kb on - strand, within GFF494at 221.092 kb on - strand, within GFF494at 221.200 kb on - strandat 221.205 kb on - strandat 221.353 kb on + strandat 221.597 kb on + strandat 221.598 kb on - strandat 221.601 kb on - strandat 221.656 kb on + strand, within GFF495at 221.657 kb on - strand, within GFF495at 221.800 kb on + strand, within GFF495at 221.908 kb on + strand, within GFF495at 222.153 kb on - strand, within GFF495at 222.153 kb on - strand, within GFF495at 222.191 kb on - strand, within GFF495at 222.200 kb on + strand, within GFF495at 222.201 kb on - strand, within GFF495at 222.201 kb on - strand, within GFF495at 222.201 kb on - strand, within GFF495at 222.202 kb on + strand, within GFF495at 222.212 kb on - strand, within GFF495at 222.284 kb on + strand, within GFF495at 222.285 kb on - strand, within GFF495

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with EIP16_phage 0.0875 MOI
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218,378 - GFF493 0.77 +1.4
218,408 + GFF493 0.77 +0.2
218,408 + GFF493 0.77 -0.0
218,409 - GFF493 0.78 -0.1
218,436 - GFF493 0.78 -1.9
218,634 + GFF493 0.84 +2.1
218,672 + GFF493 0.85 +0.3
218,672 + GFF493 0.85 +0.1
218,672 + GFF493 0.85 -0.5
218,672 + GFF493 0.85 -0.2
218,672 + GFF493 0.85 +0.2
218,675 + GFF493 0.85 -0.7
218,675 + GFF493 0.85 -0.8
218,675 + GFF493 0.85 +0.2
218,675 + GFF493 0.85 +0.1
218,676 - GFF493 0.85 -0.3
218,676 - GFF493 0.85 +0.2
218,676 - GFF493 0.85 -0.3
218,678 - GFF493 0.85 -0.7
218,781 - GFF493 0.88 -1.1
218,783 + GFF493 0.88 -0.3
218,783 + GFF493 0.88 -0.7
218,786 - GFF493 0.88 -0.5
218,799 - GFF493 0.89 -1.0
218,836 + GFF493 0.90 -0.2
218,859 + -0.9
219,081 - +0.3
219,104 + +1.2
219,182 + -0.1
219,286 + -0.0
219,286 + +1.3
219,319 + -1.0
219,385 - -2.0
219,476 - -2.7
219,582 + GFF494 0.11 -2.8
219,582 + GFF494 0.11 -0.1
219,583 - GFF494 0.11 -2.3
219,585 + GFF494 0.11 -1.1
219,620 + GFF494 0.13 -1.7
219,770 - GFF494 0.21 -1.5
219,777 - GFF494 0.21 -2.8
219,802 + GFF494 0.22 -2.2
219,802 + GFF494 0.22 +0.8
219,844 + GFF494 0.24 -1.9
219,849 - GFF494 0.24 -1.7
219,890 + GFF494 0.27 -2.0
220,027 + GFF494 0.33 -0.8
220,027 + GFF494 0.33 -1.6
220,028 - GFF494 0.33 -2.2
220,028 - GFF494 0.33 -2.1
220,048 - GFF494 0.34 -1.8
220,113 + GFF494 0.38 -0.1
220,146 + GFF494 0.39 -2.0
220,297 - GFF494 0.47 -2.4
220,367 + GFF494 0.50 -2.2
220,368 - GFF494 0.50 -0.4
220,379 + GFF494 0.51 -2.2
220,379 + GFF494 0.51 -2.3
220,387 - GFF494 0.51 -1.4
220,456 + GFF494 0.55 -0.1
220,456 + GFF494 0.55 -1.9
220,456 + GFF494 0.55 -0.8
220,457 - GFF494 0.55 -2.0
220,457 - GFF494 0.55 -2.1
220,457 - GFF494 0.55 -2.3
220,460 - GFF494 0.55 -1.5
220,486 + GFF494 0.56 -1.7
220,701 + GFF494 0.67 -2.3
220,702 - GFF494 0.67 -0.8
220,702 - GFF494 0.67 -0.2
220,702 - GFF494 0.67 -0.0
220,702 - GFF494 0.67 -1.9
221,005 - GFF494 0.82 +0.7
221,009 + GFF494 0.82 -0.8
221,009 + GFF494 0.82 +0.8
221,019 - GFF494 0.83 -1.5
221,066 - GFF494 0.85 -1.3
221,085 - GFF494 0.86 -1.9
221,092 - GFF494 0.86 -0.6
221,200 - -1.8
221,205 - +0.0
221,353 + +0.2
221,597 + -0.4
221,598 - -0.3
221,601 - -0.4
221,656 + GFF495 0.10 -0.5
221,657 - GFF495 0.10 -0.1
221,800 + GFF495 0.22 +0.2
221,908 + GFF495 0.30 +0.8
222,153 - GFF495 0.49 -0.1
222,153 - GFF495 0.49 +0.3
222,191 - GFF495 0.52 +0.4
222,200 + GFF495 0.53 -0.1
222,201 - GFF495 0.53 +0.6
222,201 - GFF495 0.53 -0.2
222,201 - GFF495 0.53 -0.1
222,202 + GFF495 0.53 -0.9
222,212 - GFF495 0.54 -1.2
222,284 + GFF495 0.59 -0.2
222,285 - GFF495 0.59 -0.3

Or see this region's nucleotide sequence