Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4576

Experiment: LB_plus_SM_buffer with EIP16_phage 0.0875 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4575 and GFF4576 are separated by 157 nucleotidesGFF4576 and GFF4577 overlap by 4 nucleotides GFF4575 - Magnesium and cobalt efflux protein CorC, at 361,944 to 362,822 GFF4575 GFF4576 - Metal-dependent hydrolase YbeY, involved in rRNA and/or ribosome maturation and assembly, at 362,980 to 363,453 GFF4576 GFF4577 - Phosphate starvation-inducible protein PhoH, predicted ATPase, at 363,450 to 364,496 GFF4577 Position (kb) 362 363 364Strain fitness (log2 ratio) -1 0 1at 362.039 kb on - strand, within GFF4575at 362.237 kb on - strand, within GFF4575at 362.237 kb on - strand, within GFF4575at 362.364 kb on - strand, within GFF4575at 362.607 kb on - strand, within GFF4575at 362.607 kb on - strand, within GFF4575at 362.853 kb on - strandat 362.871 kb on - strandat 362.871 kb on - strandat 362.873 kb on - strandat 362.924 kb on - strandat 363.006 kb on - strandat 363.796 kb on - strand, within GFF4577at 363.796 kb on - strand, within GFF4577at 363.991 kb on - strand, within GFF4577at 364.298 kb on - strand, within GFF4577

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with EIP16_phage 0.0875 MOI
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362,039 - GFF4575 0.11 +1.2
362,237 - GFF4575 0.33 -0.4
362,237 - GFF4575 0.33 +0.7
362,364 - GFF4575 0.48 +0.9
362,607 - GFF4575 0.75 +0.7
362,607 - GFF4575 0.75 +1.3
362,853 - +0.2
362,871 - +0.1
362,871 - +0.8
362,873 - +0.2
362,924 - +1.0
363,006 - -0.7
363,796 - GFF4577 0.33 +0.3
363,796 - GFF4577 0.33 -0.2
363,991 - GFF4577 0.52 +0.3
364,298 - GFF4577 0.81 -0.1

Or see this region's nucleotide sequence