Experiment: LB_plus_SM_buffer with EIP16_phage 0.0875 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2740 and GFF2741 are separated by 47 nucleotides GFF2741 and GFF2742 are separated by 47 nucleotides GFF2742 and GFF2743 overlap by 4 nucleotides
GFF2740 - FIG002901: hypothetical protein co-occurring with Cardiolipin synthetase, at 259,980 to 260,309
GFF2740
GFF2741 - Potassium voltage-gated channel subfamily KQT; possible potassium channel, VIC family, at 260,357 to 261,193
GFF2741
GFF2742 - Oligopeptide transport ATP-binding protein OppF (TC 3.A.1.5.1), at 261,241 to 262,245
GFF2742
GFF2743 - Oligopeptide transport ATP-binding protein OppD (TC 3.A.1.5.1), at 262,242 to 263,249
GFF2743
Position (kb) 261
262
263 Strain fitness (log2 ratio) -2
-1
0
1
2 at 260.387 kb on - strand at 260.514 kb on + strand, within GFF2741 at 260.515 kb on - strand, within GFF2741 at 260.546 kb on - strand, within GFF2741 at 260.546 kb on - strand, within GFF2741 at 260.627 kb on - strand, within GFF2741 at 260.659 kb on + strand, within GFF2741 at 260.664 kb on + strand, within GFF2741 at 260.665 kb on - strand, within GFF2741 at 261.077 kb on + strand, within GFF2741 at 261.404 kb on - strand, within GFF2742 at 261.467 kb on + strand, within GFF2742 at 261.468 kb on - strand, within GFF2742 at 261.483 kb on + strand, within GFF2742 at 261.500 kb on + strand, within GFF2742 at 261.501 kb on - strand, within GFF2742 at 261.501 kb on - strand, within GFF2742 at 261.531 kb on - strand, within GFF2742 at 261.531 kb on - strand, within GFF2742 at 261.531 kb on - strand, within GFF2742 at 261.586 kb on - strand, within GFF2742 at 261.688 kb on - strand, within GFF2742 at 261.854 kb on + strand, within GFF2742 at 261.854 kb on + strand, within GFF2742 at 261.855 kb on - strand, within GFF2742 at 262.009 kb on - strand, within GFF2742 at 262.112 kb on - strand, within GFF2742 at 262.534 kb on - strand, within GFF2743 at 262.634 kb on + strand, within GFF2743 at 262.634 kb on + strand, within GFF2743 at 262.895 kb on + strand, within GFF2743 at 262.898 kb on - strand, within GFF2743 at 262.905 kb on + strand, within GFF2743 at 263.096 kb on + strand, within GFF2743 at 263.101 kb on - strand, within GFF2743
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with EIP16_phage 0.0875 MOI remove 260,387 - +0.5 260,514 + GFF2741 0.19 -1.4 260,515 - GFF2741 0.19 -0.9 260,546 - GFF2741 0.23 -0.7 260,546 - GFF2741 0.23 -0.0 260,627 - GFF2741 0.32 +0.3 260,659 + GFF2741 0.36 -2.7 260,664 + GFF2741 0.37 -0.5 260,665 - GFF2741 0.37 +0.6 261,077 + GFF2741 0.86 +0.0 261,404 - GFF2742 0.16 +0.6 261,467 + GFF2742 0.22 -0.0 261,468 - GFF2742 0.23 +0.4 261,483 + GFF2742 0.24 -0.9 261,500 + GFF2742 0.26 +0.5 261,501 - GFF2742 0.26 +0.5 261,501 - GFF2742 0.26 +0.3 261,531 - GFF2742 0.29 -0.5 261,531 - GFF2742 0.29 +0.5 261,531 - GFF2742 0.29 +0.8 261,586 - GFF2742 0.34 -0.2 261,688 - GFF2742 0.44 +2.1 261,854 + GFF2742 0.61 +1.8 261,854 + GFF2742 0.61 +0.3 261,855 - GFF2742 0.61 +0.1 262,009 - GFF2742 0.76 +0.2 262,112 - GFF2742 0.87 -0.2 262,534 - GFF2743 0.29 +0.0 262,634 + GFF2743 0.39 -0.5 262,634 + GFF2743 0.39 -0.2 262,895 + GFF2743 0.65 +0.6 262,898 - GFF2743 0.65 -0.7 262,905 + GFF2743 0.66 +2.4 263,096 + GFF2743 0.85 +0.6 263,101 - GFF2743 0.85 -0.1
Or see this region's nucleotide sequence