Experiment: LB_plus_SM_buffer with EIP16_phage 0.0875 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2670 and GFF2671 are separated by 77 nucleotides GFF2671 and GFF2672 are separated by 90 nucleotides GFF2672 and GFF2673 are separated by 273 nucleotides
GFF2670 - Putative HTH-type transcriptional regulator YjgJ, TetR family, at 192,950 to 193,540
GFF2670
GFF2671 - Uncharacterized oxidoreductase YjgI (EC 1.-.-.-), at 193,618 to 194,331
GFF2671
GFF2672 - oxidoreductase, aldo/keto reductase family, at 194,422 to 195,291
GFF2672
GFF2673 - Probable transcription regulator protein of MDR efflux pump cluster, at 195,565 to 196,470
GFF2673
Position (kb) 194
195
196 Strain fitness (log2 ratio) -1
0
1 at 193.681 kb on - strand at 193.685 kb on + strand at 193.686 kb on - strand at 193.932 kb on + strand, within GFF2671 at 193.999 kb on - strand, within GFF2671 at 194.382 kb on - strand at 194.501 kb on - strand at 194.704 kb on - strand, within GFF2672 at 194.750 kb on + strand, within GFF2672 at 194.789 kb on + strand, within GFF2672 at 194.824 kb on - strand, within GFF2672 at 195.037 kb on - strand, within GFF2672 at 195.070 kb on - strand, within GFF2672 at 195.074 kb on - strand, within GFF2672 at 195.271 kb on - strand at 195.275 kb on - strand at 195.327 kb on - strand at 195.327 kb on - strand at 195.369 kb on - strand at 195.390 kb on + strand at 195.422 kb on + strand at 195.440 kb on + strand at 195.441 kb on - strand at 195.455 kb on + strand at 195.737 kb on + strand, within GFF2673 at 195.770 kb on - strand, within GFF2673 at 195.785 kb on + strand, within GFF2673 at 195.956 kb on + strand, within GFF2673 at 196.069 kb on - strand, within GFF2673 at 196.072 kb on - strand, within GFF2673 at 196.189 kb on - strand, within GFF2673 at 196.274 kb on + strand, within GFF2673 at 196.277 kb on + strand, within GFF2673
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with EIP16_phage 0.0875 MOI remove 193,681 - +0.5 193,685 + +0.1 193,686 - +0.6 193,932 + GFF2671 0.44 +0.4 193,999 - GFF2671 0.53 +0.9 194,382 - -0.8 194,501 - +0.3 194,704 - GFF2672 0.32 -0.1 194,750 + GFF2672 0.38 -0.3 194,789 + GFF2672 0.42 -0.2 194,824 - GFF2672 0.46 +0.3 195,037 - GFF2672 0.71 -1.2 195,070 - GFF2672 0.74 +0.1 195,074 - GFF2672 0.75 +0.1 195,271 - -0.0 195,275 - -1.3 195,327 - -0.3 195,327 - +0.4 195,369 - -0.0 195,390 + -0.4 195,422 + -0.3 195,440 + -0.4 195,441 - +1.2 195,455 + -0.2 195,737 + GFF2673 0.19 +0.9 195,770 - GFF2673 0.23 +0.4 195,785 + GFF2673 0.24 -0.2 195,956 + GFF2673 0.43 +0.5 196,069 - GFF2673 0.56 +0.3 196,072 - GFF2673 0.56 -0.4 196,189 - GFF2673 0.69 +0.4 196,274 + GFF2673 0.78 -0.2 196,277 + GFF2673 0.79 +0.0
Or see this region's nucleotide sequence