Experiment: LB_plus_SM_buffer with EIP16_phage 0.0875 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1977 and GFF1978 are separated by 405 nucleotides GFF1978 and GFF1979 are separated by 52 nucleotides
GFF1977 - Manganese transport protein MntH, at 170,109 to 171,287
GFF1977
GFF1978 - Nucleoside permease NupC, at 171,693 to 172,895
GFF1978
GFF1979 - FIG00638309: hypothetical protein, at 172,948 to 175,137
GFF1979
Position (kb) 171
172
173 Strain fitness (log2 ratio) -1
0
1 at 171.227 kb on + strand at 171.441 kb on - strand at 171.509 kb on - strand at 171.604 kb on + strand at 171.609 kb on + strand at 171.786 kb on + strand at 171.799 kb on + strand at 171.815 kb on - strand, within GFF1978 at 172.191 kb on + strand, within GFF1978 at 172.191 kb on + strand, within GFF1978 at 172.192 kb on - strand, within GFF1978 at 172.247 kb on + strand, within GFF1978 at 172.248 kb on - strand, within GFF1978 at 172.269 kb on + strand, within GFF1978 at 172.270 kb on - strand, within GFF1978 at 172.270 kb on - strand, within GFF1978 at 172.335 kb on + strand, within GFF1978 at 172.335 kb on + strand, within GFF1978 at 172.594 kb on + strand, within GFF1978 at 172.595 kb on - strand, within GFF1978 at 172.625 kb on + strand, within GFF1978 at 172.626 kb on - strand, within GFF1978 at 172.626 kb on - strand, within GFF1978 at 172.718 kb on + strand, within GFF1978 at 172.862 kb on - strand at 172.894 kb on - strand at 172.983 kb on - strand at 173.015 kb on - strand at 173.244 kb on + strand, within GFF1979 at 173.358 kb on + strand, within GFF1979 at 173.503 kb on - strand, within GFF1979 at 173.582 kb on + strand, within GFF1979 at 173.764 kb on + strand, within GFF1979 at 173.871 kb on + strand, within GFF1979 at 173.891 kb on + strand, within GFF1979 at 173.891 kb on + strand, within GFF1979 at 173.891 kb on + strand, within GFF1979 at 173.892 kb on - strand, within GFF1979 at 173.892 kb on - strand, within GFF1979 at 173.892 kb on - strand, within GFF1979
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with EIP16_phage 0.0875 MOI remove 171,227 + -0.1 171,441 - +0.1 171,509 - -0.3 171,604 + -0.0 171,609 + -0.1 171,786 + -0.3 171,799 + +0.8 171,815 - GFF1978 0.10 +0.9 172,191 + GFF1978 0.41 +0.9 172,191 + GFF1978 0.41 +0.7 172,192 - GFF1978 0.41 +0.3 172,247 + GFF1978 0.46 +1.3 172,248 - GFF1978 0.46 +1.5 172,269 + GFF1978 0.48 +0.8 172,270 - GFF1978 0.48 +0.3 172,270 - GFF1978 0.48 -0.7 172,335 + GFF1978 0.53 +1.3 172,335 + GFF1978 0.53 +0.4 172,594 + GFF1978 0.75 +0.3 172,595 - GFF1978 0.75 +0.9 172,625 + GFF1978 0.77 +0.5 172,626 - GFF1978 0.78 +0.5 172,626 - GFF1978 0.78 -0.2 172,718 + GFF1978 0.85 +0.2 172,862 - -0.5 172,894 - +0.3 172,983 - -0.8 173,015 - +0.1 173,244 + GFF1979 0.14 +0.4 173,358 + GFF1979 0.19 +1.0 173,503 - GFF1979 0.25 -0.0 173,582 + GFF1979 0.29 +1.5 173,764 + GFF1979 0.37 +0.2 173,871 + GFF1979 0.42 -1.0 173,891 + GFF1979 0.43 -0.4 173,891 + GFF1979 0.43 -0.1 173,891 + GFF1979 0.43 -0.1 173,892 - GFF1979 0.43 +0.1 173,892 - GFF1979 0.43 -0.4 173,892 - GFF1979 0.43 +0.5
Or see this region's nucleotide sequence