Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1705

Experiment: LB_plus_SM_buffer with EIP16_phage 0.0875 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1704 and GFF1705 are separated by 12 nucleotidesGFF1705 and GFF1706 are separated by 133 nucleotides GFF1703 - Permeases of the major facilitator superfamily, at 904 to 2,331 GFF1703 GFF1704 - Ribose operon repressor, at 2,297 to 3,286 GFF1704 GFF1705 - Ribokinase (EC 2.7.1.15), at 3,299 to 4,228 GFF1705 GFF1706 - Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1), at 4,362 to 5,252 GFF1706 Position (kb) 3 4 5Strain fitness (log2 ratio) -2 -1 0 1 2at 2.484 kb on - strand, within GFF1704at 2.520 kb on - strand, within GFF1704at 2.650 kb on - strand, within GFF1704at 2.650 kb on - strand, within GFF1704at 2.744 kb on - strand, within GFF1704at 2.744 kb on - strand, within GFF1704at 2.778 kb on + strand, within GFF1704at 2.812 kb on + strand, within GFF1704at 2.813 kb on - strand, within GFF1704at 2.878 kb on + strand, within GFF1704at 3.025 kb on + strand, within GFF1704at 3.075 kb on + strand, within GFF1704at 3.102 kb on - strand, within GFF1704at 3.102 kb on - strand, within GFF1704at 3.102 kb on - strand, within GFF1704at 3.102 kb on - strand, within GFF1704at 3.128 kb on + strand, within GFF1704at 3.162 kb on + strand, within GFF1704at 3.286 kb on + strandat 3.286 kb on + strandat 3.287 kb on - strandat 3.289 kb on + strandat 3.463 kb on + strand, within GFF1705at 3.530 kb on + strand, within GFF1705at 3.563 kb on - strand, within GFF1705at 3.745 kb on + strand, within GFF1705at 3.746 kb on - strand, within GFF1705at 3.746 kb on - strand, within GFF1705at 3.746 kb on - strand, within GFF1705at 3.748 kb on + strand, within GFF1705at 3.748 kb on + strand, within GFF1705at 3.749 kb on - strand, within GFF1705at 3.749 kb on - strand, within GFF1705at 3.959 kb on - strand, within GFF1705at 3.959 kb on - strand, within GFF1705at 3.967 kb on + strand, within GFF1705at 3.968 kb on - strand, within GFF1705at 3.968 kb on - strand, within GFF1705at 4.006 kb on + strand, within GFF1705at 4.013 kb on - strand, within GFF1705at 4.058 kb on - strand, within GFF1705at 4.070 kb on - strand, within GFF1705at 4.070 kb on - strand, within GFF1705at 4.172 kb on - strandat 4.177 kb on + strandat 4.321 kb on - strandat 4.321 kb on - strandat 4.342 kb on + strandat 4.361 kb on - strandat 4.361 kb on - strandat 4.563 kb on - strand, within GFF1706at 4.677 kb on - strand, within GFF1706at 4.715 kb on + strand, within GFF1706at 4.715 kb on + strand, within GFF1706at 5.122 kb on - strand, within GFF1706at 5.141 kb on + strand, within GFF1706at 5.150 kb on + strand, within GFF1706

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with EIP16_phage 0.0875 MOI
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2,484 - GFF1704 0.19 -0.9
2,520 - GFF1704 0.23 -0.1
2,650 - GFF1704 0.36 -1.1
2,650 - GFF1704 0.36 -0.1
2,744 - GFF1704 0.45 -0.9
2,744 - GFF1704 0.45 -0.3
2,778 + GFF1704 0.49 -0.2
2,812 + GFF1704 0.52 +1.7
2,813 - GFF1704 0.52 -0.4
2,878 + GFF1704 0.59 +0.2
3,025 + GFF1704 0.74 -0.1
3,075 + GFF1704 0.79 +0.3
3,102 - GFF1704 0.81 +0.1
3,102 - GFF1704 0.81 -0.6
3,102 - GFF1704 0.81 +0.3
3,102 - GFF1704 0.81 +0.3
3,128 + GFF1704 0.84 +0.3
3,162 + GFF1704 0.87 -0.2
3,286 + -0.7
3,286 + -1.0
3,287 - +0.2
3,289 + -2.1
3,463 + GFF1705 0.18 -0.3
3,530 + GFF1705 0.25 -0.1
3,563 - GFF1705 0.28 -0.3
3,745 + GFF1705 0.48 +0.1
3,746 - GFF1705 0.48 +0.1
3,746 - GFF1705 0.48 +0.1
3,746 - GFF1705 0.48 -1.1
3,748 + GFF1705 0.48 -0.3
3,748 + GFF1705 0.48 +0.9
3,749 - GFF1705 0.48 +0.3
3,749 - GFF1705 0.48 -0.9
3,959 - GFF1705 0.71 -0.2
3,959 - GFF1705 0.71 +0.8
3,967 + GFF1705 0.72 -1.5
3,968 - GFF1705 0.72 -0.7
3,968 - GFF1705 0.72 +0.3
4,006 + GFF1705 0.76 -0.3
4,013 - GFF1705 0.77 -0.0
4,058 - GFF1705 0.82 +0.2
4,070 - GFF1705 0.83 +0.7
4,070 - GFF1705 0.83 +1.6
4,172 - +0.0
4,177 + -0.4
4,321 - +0.2
4,321 - -0.1
4,342 + +0.0
4,361 - -0.2
4,361 - -0.5
4,563 - GFF1706 0.23 +0.8
4,677 - GFF1706 0.35 +1.8
4,715 + GFF1706 0.40 -0.3
4,715 + GFF1706 0.40 +0.5
5,122 - GFF1706 0.85 +0.3
5,141 + GFF1706 0.87 +1.4
5,150 + GFF1706 0.88 +1.5

Or see this region's nucleotide sequence