Strain Fitness in Agrobacterium fabrum C58 around Atu2085

Experiment: R2A with Nalidixic 0.02 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu2084 and Atu2085 are separated by 234 nucleotidesAtu2085 and Atu2086 are separated by 270 nucleotides Atu2084: Atu2084 - hypothetical protein, at 2,044,791 to 2,045,657 Atu2084 Atu2085: Atu2085 - UDP-3-0-(3-hydroxymyristoyl) N-acetylglucosamine deacetylase, at 2,045,892 to 2,046,848 Atu2085 Atu2086: Atu2086 - cell division protein, at 2,047,119 to 2,048,870 Atu2086 Position (kb) 2045 2046 2047Strain fitness (log2 ratio) -1 0 1at 2047.116 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Nalidixic 0.02 mM
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2,047,116 + +0.5

Or see this region's nucleotide sequence