Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF573

Experiment: LB_plus_SM_buffer with EIP16_phage 0.875 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF572 and GFF573 are separated by 229 nucleotidesGFF573 and GFF574 are separated by 29 nucleotides GFF572 - Low-affinity gluconate/H+ symporter GntU, at 301,580 to 302,920 GFF572 GFF573 - FIG01046423: hypothetical protein, at 303,150 to 303,314 GFF573 GFF574 - Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11), at 303,344 to 304,450 GFF574 Position (kb) 303 304Strain fitness (log2 ratio) -1 0 1at 302.189 kb on + strand, within GFF572at 302.780 kb on - strand, within GFF572at 302.838 kb on + strandat 302.864 kb on - strandat 302.970 kb on + strandat 302.970 kb on + strandat 302.971 kb on - strandat 302.981 kb on + strandat 303.109 kb on + strandat 303.110 kb on - strandat 303.114 kb on - strandat 303.123 kb on - strandat 303.275 kb on - strand, within GFF573at 303.310 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with EIP16_phage 0.875 MOI
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302,189 + GFF572 0.45 +1.1
302,780 - GFF572 0.89 +0.3
302,838 + -0.8
302,864 - -0.7
302,970 + +0.4
302,970 + -0.4
302,971 - -0.2
302,981 + -0.4
303,109 + -0.3
303,110 - +1.2
303,114 - -0.5
303,123 - +0.3
303,275 - GFF573 0.76 +1.5
303,310 + +0.8

Or see this region's nucleotide sequence