Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4812

Experiment: LB_plus_SM_buffer with EIP16_phage 0.875 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4810 and GFF4811 overlap by 19 nucleotidesGFF4811 and GFF4812 are separated by 10 nucleotidesGFF4812 and GFF4813 are separated by 13 nucleotidesGFF4813 and GFF4814 overlap by 4 nucleotides GFF4810 - CRISPR-associated protein, Cse3 family, at 109,420 to 110,070 GFF4810 GFF4811 - CRISPR-associated protein, Cas5e family, at 110,052 to 110,798 GFF4811 GFF4812 - CRISPR-associated protein, Cse4 family, at 110,809 to 111,867 GFF4812 GFF4813 - CRISPR-associated protein, Cse2 family, at 111,881 to 112,441 GFF4813 GFF4814 - CRISPR-associated protein, Cse1 family, at 112,438 to 113,994 GFF4814 Position (kb) 110 111 112Strain fitness (log2 ratio) -2 -1 0 1 2at 110.269 kb on + strand, within GFF4811at 110.270 kb on - strand, within GFF4811at 110.356 kb on + strand, within GFF4811at 110.379 kb on + strand, within GFF4811at 110.380 kb on - strand, within GFF4811at 110.458 kb on + strand, within GFF4811at 110.537 kb on + strand, within GFF4811at 110.542 kb on - strand, within GFF4811at 110.542 kb on - strand, within GFF4811at 110.679 kb on + strand, within GFF4811at 110.679 kb on + strand, within GFF4811at 110.679 kb on + strand, within GFF4811at 110.680 kb on - strand, within GFF4811at 110.680 kb on - strand, within GFF4811at 110.710 kb on - strand, within GFF4811at 110.902 kb on - strandat 110.913 kb on + strandat 110.913 kb on + strandat 110.914 kb on - strandat 110.925 kb on + strand, within GFF4812at 110.925 kb on + strand, within GFF4812at 110.925 kb on + strand, within GFF4812at 110.926 kb on - strand, within GFF4812at 111.039 kb on - strand, within GFF4812at 111.179 kb on + strand, within GFF4812at 111.180 kb on - strand, within GFF4812at 111.180 kb on - strand, within GFF4812at 111.180 kb on - strand, within GFF4812at 111.413 kb on - strand, within GFF4812at 111.555 kb on + strand, within GFF4812at 111.600 kb on - strand, within GFF4812at 111.684 kb on + strand, within GFF4812at 111.695 kb on - strand, within GFF4812at 111.710 kb on - strand, within GFF4812at 111.720 kb on + strand, within GFF4812at 111.721 kb on - strand, within GFF4812at 111.842 kb on - strandat 111.868 kb on - strandat 111.873 kb on + strandat 111.883 kb on - strandat 111.883 kb on - strandat 112.059 kb on - strand, within GFF4813at 112.119 kb on - strand, within GFF4813at 112.133 kb on + strand, within GFF4813at 112.253 kb on - strand, within GFF4813at 112.299 kb on - strand, within GFF4813at 112.346 kb on - strand, within GFF4813at 112.355 kb on + strand, within GFF4813at 112.356 kb on - strand, within GFF4813at 112.386 kb on - strandat 112.554 kb on - strandat 112.564 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with EIP16_phage 0.875 MOI
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110,269 + GFF4811 0.29 +0.0
110,270 - GFF4811 0.29 +0.2
110,356 + GFF4811 0.41 -0.3
110,379 + GFF4811 0.44 -0.3
110,380 - GFF4811 0.44 +1.0
110,458 + GFF4811 0.54 +0.2
110,537 + GFF4811 0.65 -0.1
110,542 - GFF4811 0.66 -2.0
110,542 - GFF4811 0.66 -0.6
110,679 + GFF4811 0.84 +0.1
110,679 + GFF4811 0.84 -0.5
110,679 + GFF4811 0.84 -0.2
110,680 - GFF4811 0.84 +0.3
110,680 - GFF4811 0.84 +0.9
110,710 - GFF4811 0.88 +0.4
110,902 - +0.6
110,913 + -0.1
110,913 + +0.3
110,914 - -0.0
110,925 + GFF4812 0.11 +0.5
110,925 + GFF4812 0.11 +1.9
110,925 + GFF4812 0.11 -0.3
110,926 - GFF4812 0.11 +0.1
111,039 - GFF4812 0.22 -0.6
111,179 + GFF4812 0.35 -1.4
111,180 - GFF4812 0.35 +0.0
111,180 - GFF4812 0.35 -0.3
111,180 - GFF4812 0.35 +0.1
111,413 - GFF4812 0.57 -0.2
111,555 + GFF4812 0.70 +0.0
111,600 - GFF4812 0.75 +0.7
111,684 + GFF4812 0.83 +0.4
111,695 - GFF4812 0.84 +0.8
111,710 - GFF4812 0.85 +0.4
111,720 + GFF4812 0.86 +1.2
111,721 - GFF4812 0.86 -0.6
111,842 - +0.1
111,868 - +0.0
111,873 + -0.6
111,883 - -0.4
111,883 - +0.3
112,059 - GFF4813 0.32 +0.1
112,119 - GFF4813 0.42 -0.5
112,133 + GFF4813 0.45 +0.3
112,253 - GFF4813 0.66 +0.6
112,299 - GFF4813 0.75 -0.1
112,346 - GFF4813 0.83 +0.1
112,355 + GFF4813 0.84 -1.0
112,356 - GFF4813 0.85 +1.2
112,386 - -0.4
112,554 - +0.1
112,564 - +0.4

Or see this region's nucleotide sequence