Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4451

Experiment: LB_plus_SM_buffer with EIP16_phage 0.875 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4449 and GFF4450 are separated by 43 nucleotidesGFF4450 and GFF4451 are separated by 30 nucleotidesGFF4451 and GFF4452 are separated by 14 nucleotides GFF4449 - Fimbriae-like adhesin FimI, at 235,001 to 235,495 GFF4449 GFF4450 - Fimbrial periplasmic chaperone SfmC, at 235,539 to 236,231 GFF4450 GFF4451 - Outer membrane usher protein SfmD, at 236,262 to 238,874 GFF4451 GFF4452 - Fimbriae-like adhesin SfmH, at 238,889 to 239,896 GFF4452 Position (kb) 236 237 238 239Strain fitness (log2 ratio) -2 -1 0 1 2at 235.350 kb on + strand, within GFF4449at 235.354 kb on + strand, within GFF4449at 235.355 kb on - strand, within GFF4449at 235.477 kb on + strandat 235.625 kb on - strand, within GFF4450at 235.682 kb on + strand, within GFF4450at 235.685 kb on + strand, within GFF4450at 235.814 kb on + strand, within GFF4450at 236.056 kb on - strand, within GFF4450at 236.058 kb on + strand, within GFF4450at 236.305 kb on + strandat 236.305 kb on + strandat 236.305 kb on + strandat 236.305 kb on + strandat 236.655 kb on - strand, within GFF4451at 236.764 kb on - strand, within GFF4451at 236.884 kb on - strand, within GFF4451at 237.092 kb on + strand, within GFF4451at 237.092 kb on + strand, within GFF4451at 237.092 kb on + strand, within GFF4451at 237.093 kb on - strand, within GFF4451at 237.093 kb on - strand, within GFF4451at 237.096 kb on + strand, within GFF4451at 237.097 kb on - strand, within GFF4451at 237.166 kb on + strand, within GFF4451at 237.181 kb on - strand, within GFF4451at 237.185 kb on + strand, within GFF4451at 237.189 kb on + strand, within GFF4451at 237.239 kb on + strand, within GFF4451at 237.271 kb on + strand, within GFF4451at 237.312 kb on + strand, within GFF4451at 237.355 kb on - strand, within GFF4451at 237.633 kb on - strand, within GFF4451at 237.633 kb on - strand, within GFF4451at 237.633 kb on - strand, within GFF4451at 237.717 kb on - strand, within GFF4451at 237.893 kb on + strand, within GFF4451at 237.908 kb on + strand, within GFF4451at 237.915 kb on + strand, within GFF4451at 237.949 kb on + strand, within GFF4451at 238.022 kb on + strand, within GFF4451at 238.023 kb on - strand, within GFF4451at 238.073 kb on + strand, within GFF4451at 238.085 kb on + strand, within GFF4451at 238.086 kb on - strand, within GFF4451at 238.086 kb on - strand, within GFF4451at 238.089 kb on + strand, within GFF4451at 238.131 kb on - strand, within GFF4451at 238.173 kb on - strand, within GFF4451at 238.203 kb on - strand, within GFF4451at 238.208 kb on + strand, within GFF4451at 238.218 kb on + strand, within GFF4451at 238.220 kb on + strand, within GFF4451at 238.221 kb on - strand, within GFF4451at 238.221 kb on - strand, within GFF4451at 238.255 kb on - strand, within GFF4451at 238.282 kb on - strand, within GFF4451at 238.282 kb on - strand, within GFF4451at 238.305 kb on - strand, within GFF4451at 238.305 kb on - strand, within GFF4451at 238.346 kb on + strand, within GFF4451at 238.481 kb on - strand, within GFF4451at 238.490 kb on + strand, within GFF4451at 238.508 kb on + strand, within GFF4451at 238.509 kb on - strand, within GFF4451at 238.606 kb on + strand, within GFF4451at 238.698 kb on - strandat 238.800 kb on + strandat 239.133 kb on - strand, within GFF4452at 239.133 kb on - strand, within GFF4452at 239.136 kb on + strand, within GFF4452at 239.177 kb on + strand, within GFF4452at 239.195 kb on + strand, within GFF4452at 239.239 kb on - strand, within GFF4452at 239.258 kb on + strand, within GFF4452at 239.281 kb on + strand, within GFF4452at 239.362 kb on + strand, within GFF4452at 239.399 kb on + strand, within GFF4452at 239.400 kb on - strand, within GFF4452at 239.440 kb on - strand, within GFF4452at 239.441 kb on + strand, within GFF4452at 239.450 kb on - strand, within GFF4452at 239.541 kb on + strand, within GFF4452at 239.605 kb on + strand, within GFF4452at 239.614 kb on + strand, within GFF4452at 239.720 kb on - strand, within GFF4452at 239.722 kb on + strand, within GFF4452at 239.806 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with EIP16_phage 0.875 MOI
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235,350 + GFF4449 0.71 +1.3
235,354 + GFF4449 0.71 -0.2
235,355 - GFF4449 0.72 -0.0
235,477 + +0.2
235,625 - GFF4450 0.12 -0.0
235,682 + GFF4450 0.21 +0.3
235,685 + GFF4450 0.21 -0.2
235,814 + GFF4450 0.40 +0.1
236,056 - GFF4450 0.75 +0.4
236,058 + GFF4450 0.75 -1.7
236,305 + -0.6
236,305 + +0.1
236,305 + +0.1
236,305 + +2.0
236,655 - GFF4451 0.15 -0.4
236,764 - GFF4451 0.19 +0.2
236,884 - GFF4451 0.24 -0.1
237,092 + GFF4451 0.32 -0.5
237,092 + GFF4451 0.32 -0.2
237,092 + GFF4451 0.32 +0.4
237,093 - GFF4451 0.32 +0.0
237,093 - GFF4451 0.32 +0.1
237,096 + GFF4451 0.32 -0.7
237,097 - GFF4451 0.32 -0.4
237,166 + GFF4451 0.35 -0.2
237,181 - GFF4451 0.35 +0.1
237,185 + GFF4451 0.35 -0.4
237,189 + GFF4451 0.35 -0.2
237,239 + GFF4451 0.37 -0.9
237,271 + GFF4451 0.39 +0.2
237,312 + GFF4451 0.40 +0.2
237,355 - GFF4451 0.42 +0.4
237,633 - GFF4451 0.52 -0.2
237,633 - GFF4451 0.52 +0.4
237,633 - GFF4451 0.52 +0.1
237,717 - GFF4451 0.56 +0.2
237,893 + GFF4451 0.62 -0.6
237,908 + GFF4451 0.63 -0.9
237,915 + GFF4451 0.63 +0.1
237,949 + GFF4451 0.65 +0.2
238,022 + GFF4451 0.67 +0.3
238,023 - GFF4451 0.67 -2.3
238,073 + GFF4451 0.69 -0.4
238,085 + GFF4451 0.70 -0.4
238,086 - GFF4451 0.70 -0.3
238,086 - GFF4451 0.70 -0.6
238,089 + GFF4451 0.70 -0.4
238,131 - GFF4451 0.72 -0.2
238,173 - GFF4451 0.73 -0.4
238,203 - GFF4451 0.74 +0.3
238,208 + GFF4451 0.74 -0.3
238,218 + GFF4451 0.75 -0.2
238,220 + GFF4451 0.75 +0.6
238,221 - GFF4451 0.75 +1.1
238,221 - GFF4451 0.75 +0.4
238,255 - GFF4451 0.76 -1.2
238,282 - GFF4451 0.77 +0.1
238,282 - GFF4451 0.77 -0.6
238,305 - GFF4451 0.78 -1.6
238,305 - GFF4451 0.78 -0.3
238,346 + GFF4451 0.80 +0.2
238,481 - GFF4451 0.85 -0.4
238,490 + GFF4451 0.85 +0.1
238,508 + GFF4451 0.86 -0.7
238,509 - GFF4451 0.86 +0.5
238,606 + GFF4451 0.90 -0.2
238,698 - -1.3
238,800 + -0.2
239,133 - GFF4452 0.24 -0.0
239,133 - GFF4452 0.24 +0.3
239,136 + GFF4452 0.25 +1.7
239,177 + GFF4452 0.29 -0.3
239,195 + GFF4452 0.30 -1.0
239,239 - GFF4452 0.35 +0.3
239,258 + GFF4452 0.37 -0.2
239,281 + GFF4452 0.39 -0.8
239,362 + GFF4452 0.47 -0.4
239,399 + GFF4452 0.51 -1.8
239,400 - GFF4452 0.51 -0.1
239,440 - GFF4452 0.55 +0.2
239,441 + GFF4452 0.55 -0.2
239,450 - GFF4452 0.56 -0.1
239,541 + GFF4452 0.65 -2.4
239,605 + GFF4452 0.71 +1.0
239,614 + GFF4452 0.72 -0.2
239,720 - GFF4452 0.82 +1.6
239,722 + GFF4452 0.83 +0.0
239,806 + -0.3

Or see this region's nucleotide sequence