Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3654

Experiment: LB_plus_SM_buffer with EIP16_phage 0.875 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3653 and GFF3654 are separated by 349 nucleotidesGFF3654 and GFF3655 are separated by 217 nucleotides GFF3653 - Anaerobic dimethyl sulfoxide reductase chain C (EC 1.8.99.-), at 25 to 858 GFF3653 GFF3654 - Hypothetical MFS-type transporter protein YcaD, at 1,208 to 2,356 GFF3654 GFF3655 - Probable transport protein, at 2,574 to 3,995 GFF3655 Position (kb) 1 2 3Strain fitness (log2 ratio) -1 0 1 2at 0.214 kb on - strand, within GFF3653at 0.403 kb on + strand, within GFF3653at 0.403 kb on + strand, within GFF3653at 0.403 kb on + strand, within GFF3653at 0.434 kb on - strand, within GFF3653at 0.684 kb on + strand, within GFF3653at 0.685 kb on - strand, within GFF3653at 0.732 kb on - strand, within GFF3653at 0.817 kb on + strandat 0.817 kb on + strandat 0.818 kb on - strandat 0.931 kb on - strandat 0.931 kb on - strandat 0.931 kb on - strandat 0.932 kb on + strandat 0.955 kb on - strandat 1.075 kb on + strandat 1.356 kb on - strand, within GFF3654at 1.399 kb on - strand, within GFF3654at 1.610 kb on + strand, within GFF3654at 1.611 kb on - strand, within GFF3654at 1.626 kb on - strand, within GFF3654at 1.626 kb on - strand, within GFF3654at 1.627 kb on + strand, within GFF3654at 1.627 kb on + strand, within GFF3654at 1.628 kb on - strand, within GFF3654at 1.732 kb on - strand, within GFF3654at 1.863 kb on + strand, within GFF3654at 1.864 kb on - strand, within GFF3654at 1.881 kb on + strand, within GFF3654at 1.883 kb on + strand, within GFF3654at 2.023 kb on - strand, within GFF3654at 2.191 kb on - strand, within GFF3654at 2.196 kb on - strand, within GFF3654at 2.297 kb on + strandat 2.395 kb on - strandat 2.421 kb on + strandat 2.543 kb on + strandat 2.667 kb on + strandat 2.667 kb on + strandat 2.668 kb on - strandat 2.722 kb on - strand, within GFF3655at 2.733 kb on + strand, within GFF3655at 2.792 kb on + strand, within GFF3655at 2.893 kb on + strand, within GFF3655at 2.949 kb on - strand, within GFF3655at 3.079 kb on + strand, within GFF3655at 3.113 kb on + strand, within GFF3655at 3.138 kb on - strand, within GFF3655at 3.181 kb on - strand, within GFF3655at 3.181 kb on - strand, within GFF3655at 3.182 kb on + strand, within GFF3655at 3.197 kb on + strand, within GFF3655at 3.197 kb on + strand, within GFF3655at 3.197 kb on + strand, within GFF3655at 3.197 kb on + strand, within GFF3655at 3.198 kb on - strand, within GFF3655at 3.241 kb on - strand, within GFF3655at 3.241 kb on - strand, within GFF3655

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with EIP16_phage 0.875 MOI
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214 - GFF3653 0.23 +0.1
403 + GFF3653 0.45 +0.6
403 + GFF3653 0.45 +0.6
403 + GFF3653 0.45 +0.2
434 - GFF3653 0.49 +0.3
684 + GFF3653 0.79 -0.9
685 - GFF3653 0.79 -0.5
732 - GFF3653 0.85 -0.0
817 + -0.2
817 + -0.2
818 - -0.1
931 - +1.4
931 - -0.7
931 - -0.1
932 + +2.3
955 - +0.2
1,075 + +0.1
1,356 - GFF3654 0.13 +1.5
1,399 - GFF3654 0.17 +0.4
1,610 + GFF3654 0.35 +0.9
1,611 - GFF3654 0.35 +1.1
1,626 - GFF3654 0.36 -0.0
1,626 - GFF3654 0.36 +0.6
1,627 + GFF3654 0.36 +0.6
1,627 + GFF3654 0.36 +0.4
1,628 - GFF3654 0.37 -0.0
1,732 - GFF3654 0.46 +0.6
1,863 + GFF3654 0.57 +0.2
1,864 - GFF3654 0.57 -0.4
1,881 + GFF3654 0.59 +0.1
1,883 + GFF3654 0.59 -0.7
2,023 - GFF3654 0.71 -0.4
2,191 - GFF3654 0.86 -0.7
2,196 - GFF3654 0.86 +0.7
2,297 + +0.1
2,395 - -0.1
2,421 + +0.3
2,543 + -0.3
2,667 + +0.3
2,667 + -0.8
2,668 - -0.8
2,722 - GFF3655 0.10 -0.2
2,733 + GFF3655 0.11 +0.8
2,792 + GFF3655 0.15 +0.1
2,893 + GFF3655 0.22 +0.3
2,949 - GFF3655 0.26 +0.5
3,079 + GFF3655 0.36 +1.0
3,113 + GFF3655 0.38 +1.0
3,138 - GFF3655 0.40 +0.8
3,181 - GFF3655 0.43 +0.2
3,181 - GFF3655 0.43 -0.0
3,182 + GFF3655 0.43 -0.0
3,197 + GFF3655 0.44 +1.0
3,197 + GFF3655 0.44 -0.2
3,197 + GFF3655 0.44 +1.0
3,197 + GFF3655 0.44 +0.3
3,198 - GFF3655 0.44 +0.3
3,241 - GFF3655 0.47 -0.5
3,241 - GFF3655 0.47 +0.0

Or see this region's nucleotide sequence