Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3643

Experiment: LB_plus_SM_buffer with EIP16_phage 0.875 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3641 and GFF3642 overlap by 1 nucleotidesGFF3642 and GFF3643 are separated by 2 nucleotidesGFF3643 and GFF3644 are separated by 3 nucleotides GFF3641 - Endonuclease III (EC 4.2.99.18), at 390,610 to 391,245 GFF3641 GFF3642 - Electron transport complex protein RnfE, at 391,245 to 391,937 GFF3642 GFF3643 - Electron transport complex protein RnfG, at 391,940 to 392,560 GFF3643 GFF3644 - Electron transport complex protein RnfD, at 392,564 to 393,622 GFF3644 Position (kb) 391 392 393Strain fitness (log2 ratio) -2 -1 0 1at 390.976 kb on - strand, within GFF3641at 390.993 kb on + strand, within GFF3641at 390.994 kb on - strand, within GFF3641at 391.776 kb on - strand, within GFF3642at 391.792 kb on - strand, within GFF3642at 392.164 kb on + strand, within GFF3643at 392.165 kb on - strand, within GFF3643at 392.172 kb on - strand, within GFF3643at 392.262 kb on + strand, within GFF3643at 392.371 kb on - strand, within GFF3643at 392.397 kb on + strand, within GFF3643at 392.503 kb on + strandat 392.533 kb on + strandat 392.583 kb on + strandat 392.601 kb on + strandat 392.602 kb on - strandat 392.693 kb on + strand, within GFF3644at 392.992 kb on - strand, within GFF3644at 393.046 kb on + strand, within GFF3644at 393.227 kb on + strand, within GFF3644at 393.227 kb on + strand, within GFF3644at 393.288 kb on - strand, within GFF3644at 393.469 kb on + strand, within GFF3644

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with EIP16_phage 0.875 MOI
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390,976 - GFF3641 0.58 -0.5
390,993 + GFF3641 0.60 -0.3
390,994 - GFF3641 0.60 +0.0
391,776 - GFF3642 0.77 -1.9
391,792 - GFF3642 0.79 -1.0
392,164 + GFF3643 0.36 -1.3
392,165 - GFF3643 0.36 -1.8
392,172 - GFF3643 0.37 -0.2
392,262 + GFF3643 0.52 -2.3
392,371 - GFF3643 0.69 -0.4
392,397 + GFF3643 0.74 -0.6
392,503 + -1.4
392,533 + -1.9
392,583 + +0.0
392,601 + +0.1
392,602 - +0.8
392,693 + GFF3644 0.12 -1.0
392,992 - GFF3644 0.40 -1.8
393,046 + GFF3644 0.46 +1.2
393,227 + GFF3644 0.63 -1.0
393,227 + GFF3644 0.63 -1.9
393,288 - GFF3644 0.68 -1.4
393,469 + GFF3644 0.85 -1.5

Or see this region's nucleotide sequence