Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3058

Experiment: LB_plus_SM_buffer with EIP16_phage 0.875 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3055 and GFF3056 overlap by 4 nucleotidesGFF3056 and GFF3057 are separated by 7 nucleotidesGFF3057 and GFF3058 overlap by 8 nucleotidesGFF3058 and GFF3059 are separated by 90 nucleotides GFF3055 - Integral membrane protein YggT, involved in response to extracytoplasmic stress (osmotic shock), at 66,802 to 67,368 GFF3055 GFF3056 - COG1872, at 67,365 to 67,655 GFF3056 GFF3057 - Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15), at 67,663 to 68,256 GFF3057 GFF3058 - Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB, at 68,249 to 69,385 GFF3058 GFF3059 - Putative alpha helix chain, at 69,476 to 70,483 GFF3059 Position (kb) 68 69 70Strain fitness (log2 ratio) -1 0 1 2 3at 67.288 kb on + strand, within GFF3055at 67.289 kb on - strand, within GFF3055at 67.289 kb on - strand, within GFF3055at 67.300 kb on - strand, within GFF3055at 67.319 kb on + strandat 67.319 kb on + strandat 67.439 kb on + strand, within GFF3056at 67.653 kb on + strandat 67.657 kb on + strandat 67.912 kb on + strand, within GFF3057at 67.913 kb on - strand, within GFF3057at 67.924 kb on + strand, within GFF3057at 67.980 kb on - strand, within GFF3057at 68.148 kb on - strand, within GFF3057at 68.255 kb on - strandat 68.278 kb on + strandat 68.278 kb on + strandat 68.285 kb on - strandat 68.806 kb on + strand, within GFF3058at 68.929 kb on - strand, within GFF3058at 68.931 kb on + strand, within GFF3058at 69.008 kb on + strand, within GFF3058at 69.118 kb on + strand, within GFF3058at 69.119 kb on - strand, within GFF3058at 69.297 kb on - strandat 69.297 kb on - strandat 69.351 kb on + strandat 69.481 kb on + strandat 69.599 kb on + strand, within GFF3059at 69.680 kb on + strand, within GFF3059at 69.702 kb on - strand, within GFF3059at 69.771 kb on - strand, within GFF3059at 69.810 kb on + strand, within GFF3059at 69.820 kb on + strand, within GFF3059at 69.820 kb on + strand, within GFF3059at 69.834 kb on - strand, within GFF3059at 69.838 kb on - strand, within GFF3059at 70.039 kb on + strand, within GFF3059at 70.039 kb on + strand, within GFF3059at 70.069 kb on + strand, within GFF3059at 70.069 kb on + strand, within GFF3059at 70.070 kb on - strand, within GFF3059at 70.124 kb on + strand, within GFF3059at 70.125 kb on - strand, within GFF3059at 70.134 kb on + strand, within GFF3059at 70.134 kb on + strand, within GFF3059at 70.134 kb on + strand, within GFF3059at 70.134 kb on + strand, within GFF3059at 70.134 kb on + strand, within GFF3059at 70.134 kb on + strand, within GFF3059at 70.230 kb on + strand, within GFF3059at 70.231 kb on - strand, within GFF3059at 70.261 kb on - strand, within GFF3059at 70.261 kb on - strand, within GFF3059at 70.261 kb on - strand, within GFF3059at 70.261 kb on - strand, within GFF3059at 70.264 kb on + strand, within GFF3059at 70.358 kb on + strand, within GFF3059at 70.369 kb on - strand, within GFF3059at 70.376 kb on - strand, within GFF3059at 70.376 kb on - strand, within GFF3059

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with EIP16_phage 0.875 MOI
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67,288 + GFF3055 0.86 -0.0
67,289 - GFF3055 0.86 +0.7
67,289 - GFF3055 0.86 +0.9
67,300 - GFF3055 0.88 +0.7
67,319 + +0.3
67,319 + -0.1
67,439 + GFF3056 0.25 -0.1
67,653 + -0.7
67,657 + +0.1
67,912 + GFF3057 0.42 +0.3
67,913 - GFF3057 0.42 -0.4
67,924 + GFF3057 0.44 -0.7
67,980 - GFF3057 0.53 +0.9
68,148 - GFF3057 0.82 +0.5
68,255 - +1.0
68,278 + +0.6
68,278 + +0.5
68,285 - +0.4
68,806 + GFF3058 0.49 +0.3
68,929 - GFF3058 0.60 +0.3
68,931 + GFF3058 0.60 +2.8
69,008 + GFF3058 0.67 +0.4
69,118 + GFF3058 0.76 +0.5
69,119 - GFF3058 0.77 +0.6
69,297 - +0.9
69,297 - +0.8
69,351 + -1.1
69,481 + -0.6
69,599 + GFF3059 0.12 -0.6
69,680 + GFF3059 0.20 +0.7
69,702 - GFF3059 0.22 +0.9
69,771 - GFF3059 0.29 -0.1
69,810 + GFF3059 0.33 +0.2
69,820 + GFF3059 0.34 +0.2
69,820 + GFF3059 0.34 +0.3
69,834 - GFF3059 0.36 +2.4
69,838 - GFF3059 0.36 -0.1
70,039 + GFF3059 0.56 -0.3
70,039 + GFF3059 0.56 -0.4
70,069 + GFF3059 0.59 -0.4
70,069 + GFF3059 0.59 +0.4
70,070 - GFF3059 0.59 -0.0
70,124 + GFF3059 0.64 +0.4
70,125 - GFF3059 0.64 +0.5
70,134 + GFF3059 0.65 +1.0
70,134 + GFF3059 0.65 +0.6
70,134 + GFF3059 0.65 +2.2
70,134 + GFF3059 0.65 +0.1
70,134 + GFF3059 0.65 -0.2
70,134 + GFF3059 0.65 -0.9
70,230 + GFF3059 0.75 +0.2
70,231 - GFF3059 0.75 -1.0
70,261 - GFF3059 0.78 -0.2
70,261 - GFF3059 0.78 +0.8
70,261 - GFF3059 0.78 +0.7
70,261 - GFF3059 0.78 +0.4
70,264 + GFF3059 0.78 -0.5
70,358 + GFF3059 0.88 -0.3
70,369 - GFF3059 0.89 -0.4
70,376 - GFF3059 0.89 +0.5
70,376 - GFF3059 0.89 +0.2

Or see this region's nucleotide sequence