Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF282

Experiment: LB_plus_SM_buffer with EIP16_phage 0.875 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF281 and GFF282 are separated by 1 nucleotidesGFF282 and GFF283 overlap by 2 nucleotidesGFF283 and GFF284 are separated by 257 nucleotidesGFF284 and GFF285 are separated by 109 nucleotides GFF281 - Uncharacterized protein YidR, at 879 to 2,105 GFF281 GFF282 - Outer membrane lipoprotein YidQ, at 2,107 to 2,367 GFF282 GFF283 - hypothetical protein, at 2,366 to 2,485 GFF283 GFF284 - 16 kDa heat shock protein A, at 2,743 to 3,162 GFF284 GFF285 - 16 kDa heat shock protein B, at 3,272 to 3,700 GFF285 Position (kb) 2 3Strain fitness (log2 ratio) -1 0 1 2at 1.112 kb on + strand, within GFF281at 1.200 kb on - strand, within GFF281at 1.220 kb on + strand, within GFF281at 1.221 kb on - strand, within GFF281at 1.301 kb on + strand, within GFF281at 1.301 kb on + strand, within GFF281at 1.305 kb on + strand, within GFF281at 1.307 kb on + strand, within GFF281at 1.421 kb on + strand, within GFF281at 1.422 kb on - strand, within GFF281at 1.485 kb on - strand, within GFF281at 1.591 kb on + strand, within GFF281at 1.694 kb on + strand, within GFF281at 1.700 kb on + strand, within GFF281at 1.758 kb on - strand, within GFF281at 1.856 kb on - strand, within GFF281at 1.876 kb on + strand, within GFF281at 1.890 kb on - strand, within GFF281at 2.080 kb on + strandat 2.081 kb on - strandat 2.104 kb on - strandat 2.232 kb on + strand, within GFF282at 2.232 kb on + strand, within GFF282at 2.336 kb on + strand, within GFF282at 2.336 kb on + strand, within GFF282at 2.341 kb on - strand, within GFF282at 2.341 kb on - strand, within GFF282at 2.341 kb on - strand, within GFF282at 2.390 kb on - strand, within GFF283at 2.390 kb on - strand, within GFF283at 2.410 kb on + strand, within GFF283at 2.481 kb on + strandat 2.484 kb on - strandat 2.613 kb on + strandat 2.624 kb on + strandat 2.628 kb on + strandat 2.642 kb on + strandat 2.644 kb on + strandat 2.651 kb on + strandat 2.652 kb on - strandat 2.742 kb on + strandat 2.823 kb on + strand, within GFF284at 2.887 kb on + strand, within GFF284at 2.997 kb on + strand, within GFF284at 2.998 kb on - strand, within GFF284at 2.998 kb on - strand, within GFF284at 3.001 kb on + strand, within GFF284at 3.001 kb on + strand, within GFF284at 3.002 kb on - strand, within GFF284at 3.039 kb on + strand, within GFF284at 3.039 kb on + strand, within GFF284at 3.100 kb on + strand, within GFF284at 3.100 kb on + strand, within GFF284at 3.101 kb on - strand, within GFF284at 3.102 kb on + strand, within GFF284at 3.255 kb on + strandat 3.256 kb on - strandat 3.271 kb on + strandat 3.278 kb on - strandat 3.281 kb on + strandat 3.282 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with EIP16_phage 0.875 MOI
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1,112 + GFF281 0.19 -0.1
1,200 - GFF281 0.26 -0.4
1,220 + GFF281 0.28 -0.4
1,221 - GFF281 0.28 +0.9
1,301 + GFF281 0.34 -0.3
1,301 + GFF281 0.34 +0.2
1,305 + GFF281 0.35 +1.7
1,307 + GFF281 0.35 +0.7
1,421 + GFF281 0.44 -0.6
1,422 - GFF281 0.44 -0.4
1,485 - GFF281 0.49 -1.0
1,591 + GFF281 0.58 -0.4
1,694 + GFF281 0.66 +0.8
1,700 + GFF281 0.67 +0.5
1,758 - GFF281 0.72 -0.5
1,856 - GFF281 0.80 -0.3
1,876 + GFF281 0.81 +0.6
1,890 - GFF281 0.82 -0.0
2,080 + +0.2
2,081 - +0.4
2,104 - +1.3
2,232 + GFF282 0.48 +0.3
2,232 + GFF282 0.48 +1.1
2,336 + GFF282 0.88 +2.1
2,336 + GFF282 0.88 -0.3
2,341 - GFF282 0.90 -0.1
2,341 - GFF282 0.90 -0.4
2,341 - GFF282 0.90 +0.3
2,390 - GFF283 0.20 -0.4
2,390 - GFF283 0.20 +0.1
2,410 + GFF283 0.37 +0.1
2,481 + -0.0
2,484 - +0.7
2,613 + -0.3
2,624 + +1.1
2,628 + +0.2
2,642 + -0.1
2,644 + -0.3
2,651 + -0.9
2,652 - -1.3
2,742 + +0.1
2,823 + GFF284 0.19 +0.9
2,887 + GFF284 0.34 +1.0
2,997 + GFF284 0.60 +0.6
2,998 - GFF284 0.61 -0.0
2,998 - GFF284 0.61 -0.6
3,001 + GFF284 0.61 +0.3
3,001 + GFF284 0.61 +0.3
3,002 - GFF284 0.62 -0.1
3,039 + GFF284 0.70 +0.1
3,039 + GFF284 0.70 +0.0
3,100 + GFF284 0.85 -0.8
3,100 + GFF284 0.85 +0.1
3,101 - GFF284 0.85 +0.4
3,102 + GFF284 0.85 -0.3
3,255 + +0.3
3,256 - -0.3
3,271 + -0.5
3,278 - -0.9
3,281 + +0.4
3,282 - -0.1

Or see this region's nucleotide sequence