Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1764

Experiment: LB_plus_SM_buffer with EIP16_phage 0.875 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1762 and GFF1763 overlap by 4 nucleotidesGFF1763 and GFF1764 overlap by 17 nucleotidesGFF1764 and GFF1765 overlap by 4 nucleotides GFF1762 - D-Galactonate repressor DgoR, at 65,895 to 66,584 GFF1762 GFF1763 - 2-dehydro-3-deoxygalactonokinase (EC 2.7.1.58), at 66,581 to 67,459 GFF1763 GFF1764 - 2-dehydro-3-deoxyphosphogalactonate aldolase (EC 4.1.2.21), at 67,443 to 68,060 GFF1764 GFF1765 - Galactonate dehydratase (EC 4.2.1.6), at 68,057 to 69,205 GFF1765 Position (kb) 67 68 69Strain fitness (log2 ratio) -1 0 1 2at 66.479 kb on + strand, within GFF1762at 66.479 kb on + strand, within GFF1762at 66.479 kb on + strand, within GFF1762at 66.480 kb on - strand, within GFF1762at 66.593 kb on + strandat 66.594 kb on - strandat 66.701 kb on - strand, within GFF1763at 66.701 kb on - strand, within GFF1763at 66.787 kb on + strand, within GFF1763at 66.792 kb on + strand, within GFF1763at 66.856 kb on - strand, within GFF1763at 66.983 kb on + strand, within GFF1763at 66.984 kb on - strand, within GFF1763at 67.166 kb on - strand, within GFF1763at 67.356 kb on - strand, within GFF1763at 67.369 kb on + strand, within GFF1763at 67.369 kb on + strand, within GFF1763at 67.458 kb on - strandat 67.475 kb on + strandat 67.480 kb on + strandat 67.487 kb on + strandat 67.488 kb on - strandat 67.547 kb on + strand, within GFF1764at 67.549 kb on + strand, within GFF1764at 67.550 kb on - strand, within GFF1764at 67.609 kb on - strand, within GFF1764at 67.642 kb on + strand, within GFF1764at 67.660 kb on + strand, within GFF1764at 67.661 kb on - strand, within GFF1764at 67.740 kb on + strand, within GFF1764at 67.741 kb on - strand, within GFF1764at 67.741 kb on - strand, within GFF1764at 68.054 kb on + strandat 68.081 kb on + strandat 68.082 kb on - strandat 68.088 kb on + strandat 68.174 kb on - strand, within GFF1765at 68.190 kb on + strand, within GFF1765at 68.191 kb on - strand, within GFF1765at 68.191 kb on - strand, within GFF1765at 68.208 kb on - strand, within GFF1765at 68.253 kb on + strand, within GFF1765at 68.254 kb on - strand, within GFF1765at 68.254 kb on - strand, within GFF1765at 68.406 kb on - strand, within GFF1765at 68.406 kb on - strand, within GFF1765at 68.408 kb on - strand, within GFF1765at 68.678 kb on - strand, within GFF1765at 68.765 kb on - strand, within GFF1765at 68.765 kb on - strand, within GFF1765at 68.765 kb on - strand, within GFF1765at 68.861 kb on + strand, within GFF1765at 68.888 kb on + strand, within GFF1765at 68.888 kb on + strand, within GFF1765at 68.889 kb on - strand, within GFF1765at 69.005 kb on + strand, within GFF1765at 69.007 kb on + strand, within GFF1765at 69.007 kb on + strand, within GFF1765at 69.008 kb on - strand, within GFF1765

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with EIP16_phage 0.875 MOI
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66,479 + GFF1762 0.85 +0.3
66,479 + GFF1762 0.85 -0.0
66,479 + GFF1762 0.85 +0.3
66,480 - GFF1762 0.85 -0.6
66,593 + +0.1
66,594 - -0.0
66,701 - GFF1763 0.14 +0.3
66,701 - GFF1763 0.14 +0.2
66,787 + GFF1763 0.23 +0.2
66,792 + GFF1763 0.24 -0.4
66,856 - GFF1763 0.31 -0.6
66,983 + GFF1763 0.46 +0.0
66,984 - GFF1763 0.46 +0.4
67,166 - GFF1763 0.67 -0.3
67,356 - GFF1763 0.88 -0.2
67,369 + GFF1763 0.90 +0.5
67,369 + GFF1763 0.90 +0.4
67,458 - +1.8
67,475 + +0.3
67,480 + +2.4
67,487 + -0.2
67,488 - +0.4
67,547 + GFF1764 0.17 +0.2
67,549 + GFF1764 0.17 +0.5
67,550 - GFF1764 0.17 -0.1
67,609 - GFF1764 0.27 +0.6
67,642 + GFF1764 0.32 +0.0
67,660 + GFF1764 0.35 -0.1
67,661 - GFF1764 0.35 +0.0
67,740 + GFF1764 0.48 +0.1
67,741 - GFF1764 0.48 +0.1
67,741 - GFF1764 0.48 +1.4
68,054 + -0.4
68,081 + -0.4
68,082 - -1.1
68,088 + -0.0
68,174 - GFF1765 0.10 +1.5
68,190 + GFF1765 0.12 -0.1
68,191 - GFF1765 0.12 +0.2
68,191 - GFF1765 0.12 -0.8
68,208 - GFF1765 0.13 +0.8
68,253 + GFF1765 0.17 +0.3
68,254 - GFF1765 0.17 +0.7
68,254 - GFF1765 0.17 -0.6
68,406 - GFF1765 0.30 +0.0
68,406 - GFF1765 0.30 -0.3
68,408 - GFF1765 0.31 +2.0
68,678 - GFF1765 0.54 +0.6
68,765 - GFF1765 0.62 -0.5
68,765 - GFF1765 0.62 +0.2
68,765 - GFF1765 0.62 -0.8
68,861 + GFF1765 0.70 +0.8
68,888 + GFF1765 0.72 +0.7
68,888 + GFF1765 0.72 -0.4
68,889 - GFF1765 0.72 -0.2
69,005 + GFF1765 0.83 -0.2
69,007 + GFF1765 0.83 -0.1
69,007 + GFF1765 0.83 +0.2
69,008 - GFF1765 0.83 -0.2

Or see this region's nucleotide sequence