Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF125

Experiment: LB_plus_SM_buffer with EIP16_phage 0.875 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF124 and GFF125 are separated by 84 nucleotidesGFF125 and GFF126 overlap by 2 nucleotides GFF124 - Aromatic amino acid transport protein AroP, at 114,340 to 115,710 GFF124 GFF125 - hypothetical protein, at 115,795 to 115,920 GFF125 GFF126 - Possible GPH family transporter (TC 2.A.2) for arabinosides, at 115,919 to 117,280 GFF126 Position (kb) 115 116Strain fitness (log2 ratio) -2 -1 0 1 2 3at 114.966 kb on + strand, within GFF124at 114.966 kb on + strand, within GFF124at 114.967 kb on - strand, within GFF124at 115.050 kb on + strand, within GFF124at 115.064 kb on - strand, within GFF124at 115.236 kb on + strand, within GFF124at 115.237 kb on - strand, within GFF124at 115.249 kb on + strand, within GFF124at 115.263 kb on + strand, within GFF124at 115.264 kb on - strand, within GFF124at 115.391 kb on - strand, within GFF124at 115.391 kb on - strand, within GFF124at 115.393 kb on - strand, within GFF124at 115.452 kb on + strand, within GFF124at 115.480 kb on - strand, within GFF124at 115.480 kb on - strand, within GFF124at 115.594 kb on - strandat 115.674 kb on + strandat 115.754 kb on - strandat 115.754 kb on - strandat 115.840 kb on - strand, within GFF125at 115.955 kb on - strandat 116.022 kb on + strandat 116.023 kb on - strandat 116.096 kb on - strand, within GFF126at 116.099 kb on + strand, within GFF126at 116.100 kb on - strand, within GFF126at 116.122 kb on - strand, within GFF126at 116.186 kb on + strand, within GFF126at 116.189 kb on - strand, within GFF126at 116.220 kb on - strand, within GFF126at 116.459 kb on - strand, within GFF126at 116.459 kb on - strand, within GFF126at 116.569 kb on - strand, within GFF126at 116.581 kb on - strand, within GFF126at 116.589 kb on + strand, within GFF126at 116.589 kb on + strand, within GFF126at 116.589 kb on + strand, within GFF126at 116.590 kb on - strand, within GFF126at 116.590 kb on - strand, within GFF126at 116.594 kb on - strand, within GFF126at 116.612 kb on - strand, within GFF126at 116.633 kb on + strand, within GFF126at 116.633 kb on + strand, within GFF126at 116.634 kb on - strand, within GFF126at 116.634 kb on - strand, within GFF126at 116.634 kb on - strand, within GFF126at 116.634 kb on - strand, within GFF126at 116.636 kb on + strand, within GFF126at 116.637 kb on - strand, within GFF126at 116.637 kb on - strand, within GFF126

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with EIP16_phage 0.875 MOI
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114,966 + GFF124 0.46 -2.5
114,966 + GFF124 0.46 -0.3
114,967 - GFF124 0.46 +0.7
115,050 + GFF124 0.52 -0.2
115,064 - GFF124 0.53 +0.2
115,236 + GFF124 0.65 -0.0
115,237 - GFF124 0.65 +0.0
115,249 + GFF124 0.66 -0.2
115,263 + GFF124 0.67 +0.5
115,264 - GFF124 0.67 -0.7
115,391 - GFF124 0.77 -0.4
115,391 - GFF124 0.77 +2.9
115,393 - GFF124 0.77 -0.7
115,452 + GFF124 0.81 +0.6
115,480 - GFF124 0.83 +0.3
115,480 - GFF124 0.83 +0.6
115,594 - +0.4
115,674 + +0.4
115,754 - -1.5
115,754 - +1.4
115,840 - GFF125 0.36 +2.4
115,955 - +0.6
116,022 + -0.1
116,023 - +0.0
116,096 - GFF126 0.13 +2.4
116,099 + GFF126 0.13 -1.3
116,100 - GFF126 0.13 -0.3
116,122 - GFF126 0.15 -0.0
116,186 + GFF126 0.20 +0.1
116,189 - GFF126 0.20 +0.0
116,220 - GFF126 0.22 +1.1
116,459 - GFF126 0.40 -0.3
116,459 - GFF126 0.40 +0.3
116,569 - GFF126 0.48 -0.6
116,581 - GFF126 0.49 +0.2
116,589 + GFF126 0.49 -0.4
116,589 + GFF126 0.49 +0.2
116,589 + GFF126 0.49 +0.1
116,590 - GFF126 0.49 -0.7
116,590 - GFF126 0.49 -0.6
116,594 - GFF126 0.50 +0.0
116,612 - GFF126 0.51 -0.4
116,633 + GFF126 0.52 -0.0
116,633 + GFF126 0.52 -0.4
116,634 - GFF126 0.52 -0.3
116,634 - GFF126 0.52 -0.5
116,634 - GFF126 0.52 +0.3
116,634 - GFF126 0.52 -0.3
116,636 + GFF126 0.53 +0.7
116,637 - GFF126 0.53 +0.3
116,637 - GFF126 0.53 +0.3

Or see this region's nucleotide sequence