Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF493

Experiment: LB_plus_SM_buffer with EIP16_phage 8.75 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF492 and GFF493 are separated by 71 nucleotidesGFF493 and GFF494 are separated by 173 nucleotides GFF492 - Endoglucanase precursor (EC 3.2.1.4), at 214,551 to 215,660 GFF492 GFF493 - Cellulose synthase operon protein C, at 215,732 to 219,184 GFF493 GFF494 - Protein yhjK, at 219,358 to 221,364 GFF494 Position (kb) 215 216 217 218 219 220Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 214.828 kb on - strand, within GFF492at 215.076 kb on - strand, within GFF492at 215.097 kb on + strand, within GFF492at 215.098 kb on - strand, within GFF492at 215.224 kb on - strand, within GFF492at 215.278 kb on - strand, within GFF492at 215.295 kb on + strand, within GFF492at 215.345 kb on - strand, within GFF492at 215.547 kb on + strand, within GFF492at 215.547 kb on + strand, within GFF492at 215.554 kb on - strandat 215.554 kb on - strandat 215.620 kb on + strandat 215.620 kb on + strandat 215.753 kb on - strandat 215.761 kb on - strandat 215.848 kb on - strandat 215.848 kb on - strandat 215.921 kb on + strandat 215.961 kb on + strandat 216.431 kb on + strand, within GFF493at 216.485 kb on - strand, within GFF493at 216.762 kb on - strand, within GFF493at 216.910 kb on + strand, within GFF493at 216.932 kb on + strand, within GFF493at 216.950 kb on - strand, within GFF493at 216.965 kb on - strand, within GFF493at 216.975 kb on + strand, within GFF493at 217.307 kb on + strand, within GFF493at 217.307 kb on + strand, within GFF493at 217.307 kb on + strand, within GFF493at 217.307 kb on + strand, within GFF493at 217.399 kb on + strand, within GFF493at 217.400 kb on - strand, within GFF493at 217.586 kb on + strand, within GFF493at 217.586 kb on + strand, within GFF493at 217.587 kb on - strand, within GFF493at 217.587 kb on - strand, within GFF493at 217.616 kb on - strand, within GFF493at 217.720 kb on + strand, within GFF493at 217.720 kb on + strand, within GFF493at 217.723 kb on + strand, within GFF493at 217.724 kb on - strand, within GFF493at 217.848 kb on + strand, within GFF493at 217.849 kb on - strand, within GFF493at 217.910 kb on + strand, within GFF493at 217.966 kb on + strand, within GFF493at 218.026 kb on + strand, within GFF493at 218.132 kb on - strand, within GFF493at 218.221 kb on + strand, within GFF493at 218.241 kb on - strand, within GFF493at 218.248 kb on + strand, within GFF493at 218.248 kb on + strand, within GFF493at 218.249 kb on - strand, within GFF493at 218.257 kb on + strand, within GFF493at 218.264 kb on - strand, within GFF493at 218.378 kb on - strand, within GFF493at 218.408 kb on + strand, within GFF493at 218.408 kb on + strand, within GFF493at 218.409 kb on - strand, within GFF493at 218.436 kb on - strand, within GFF493at 218.634 kb on + strand, within GFF493at 218.672 kb on + strand, within GFF493at 218.672 kb on + strand, within GFF493at 218.672 kb on + strand, within GFF493at 218.672 kb on + strand, within GFF493at 218.672 kb on + strand, within GFF493at 218.675 kb on + strand, within GFF493at 218.675 kb on + strand, within GFF493at 218.675 kb on + strand, within GFF493at 218.675 kb on + strand, within GFF493at 218.676 kb on - strand, within GFF493at 218.676 kb on - strand, within GFF493at 218.676 kb on - strand, within GFF493at 218.678 kb on - strand, within GFF493at 218.781 kb on - strand, within GFF493at 218.783 kb on + strand, within GFF493at 218.783 kb on + strand, within GFF493at 218.786 kb on - strand, within GFF493at 218.799 kb on - strand, within GFF493at 218.836 kb on + strand, within GFF493at 218.859 kb on + strandat 219.081 kb on - strandat 219.104 kb on + strandat 219.182 kb on + strandat 219.286 kb on + strandat 219.286 kb on + strandat 219.319 kb on + strandat 219.385 kb on - strandat 219.476 kb on - strandat 219.582 kb on + strand, within GFF494at 219.582 kb on + strand, within GFF494at 219.583 kb on - strand, within GFF494at 219.585 kb on + strand, within GFF494at 219.620 kb on + strand, within GFF494at 219.770 kb on - strand, within GFF494at 219.777 kb on - strand, within GFF494at 219.802 kb on + strand, within GFF494at 219.802 kb on + strand, within GFF494at 219.844 kb on + strand, within GFF494at 219.849 kb on - strand, within GFF494at 219.890 kb on + strand, within GFF494at 220.027 kb on + strand, within GFF494at 220.027 kb on + strand, within GFF494at 220.028 kb on - strand, within GFF494at 220.028 kb on - strand, within GFF494at 220.048 kb on - strand, within GFF494at 220.113 kb on + strand, within GFF494at 220.146 kb on + strand, within GFF494

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with EIP16_phage 8.75 MOI
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214,828 - GFF492 0.25 +0.5
215,076 - GFF492 0.47 +0.1
215,097 + GFF492 0.49 +1.0
215,098 - GFF492 0.49 +0.2
215,224 - GFF492 0.61 +1.4
215,278 - GFF492 0.65 +2.5
215,295 + GFF492 0.67 +0.2
215,345 - GFF492 0.72 +0.6
215,547 + GFF492 0.90 +0.2
215,547 + GFF492 0.90 +1.2
215,554 - -0.3
215,554 - -0.1
215,620 + -0.0
215,620 + +0.2
215,753 - -1.1
215,761 - +0.7
215,848 - -0.0
215,848 - +0.4
215,921 + -0.1
215,961 + -0.5
216,431 + GFF493 0.20 +0.4
216,485 - GFF493 0.22 +0.3
216,762 - GFF493 0.30 -1.3
216,910 + GFF493 0.34 -0.1
216,932 + GFF493 0.35 +0.5
216,950 - GFF493 0.35 -0.8
216,965 - GFF493 0.36 -1.6
216,975 + GFF493 0.36 +0.6
217,307 + GFF493 0.46 +0.4
217,307 + GFF493 0.46 -0.1
217,307 + GFF493 0.46 -0.0
217,307 + GFF493 0.46 -0.2
217,399 + GFF493 0.48 -0.8
217,400 - GFF493 0.48 -0.7
217,586 + GFF493 0.54 -0.8
217,586 + GFF493 0.54 +0.6
217,587 - GFF493 0.54 -0.2
217,587 - GFF493 0.54 +0.4
217,616 - GFF493 0.55 +0.8
217,720 + GFF493 0.58 +0.2
217,720 + GFF493 0.58 +0.0
217,723 + GFF493 0.58 -0.6
217,724 - GFF493 0.58 +1.3
217,848 + GFF493 0.61 +0.0
217,849 - GFF493 0.61 +0.0
217,910 + GFF493 0.63 +4.6
217,966 + GFF493 0.65 -0.2
218,026 + GFF493 0.66 -1.4
218,132 - GFF493 0.70 -0.6
218,221 + GFF493 0.72 +0.1
218,241 - GFF493 0.73 +0.6
218,248 + GFF493 0.73 +1.0
218,248 + GFF493 0.73 -0.4
218,249 - GFF493 0.73 -1.0
218,257 + GFF493 0.73 -0.4
218,264 - GFF493 0.73 -0.1
218,378 - GFF493 0.77 -1.1
218,408 + GFF493 0.77 -0.3
218,408 + GFF493 0.77 -1.0
218,409 - GFF493 0.78 -0.5
218,436 - GFF493 0.78 +0.8
218,634 + GFF493 0.84 +3.1
218,672 + GFF493 0.85 -0.0
218,672 + GFF493 0.85 -0.0
218,672 + GFF493 0.85 +0.1
218,672 + GFF493 0.85 -1.0
218,672 + GFF493 0.85 -0.1
218,675 + GFF493 0.85 -0.6
218,675 + GFF493 0.85 -2.2
218,675 + GFF493 0.85 -0.2
218,675 + GFF493 0.85 +0.1
218,676 - GFF493 0.85 -0.5
218,676 - GFF493 0.85 +0.8
218,676 - GFF493 0.85 -0.6
218,678 - GFF493 0.85 -0.2
218,781 - GFF493 0.88 -1.0
218,783 + GFF493 0.88 -0.1
218,783 + GFF493 0.88 +0.5
218,786 - GFF493 0.88 -0.2
218,799 - GFF493 0.89 -3.0
218,836 + GFF493 0.90 -1.0
218,859 + -0.8
219,081 - +0.4
219,104 + +0.4
219,182 + +0.3
219,286 + -0.4
219,286 + +0.8
219,319 + -0.5
219,385 - -1.3
219,476 - -1.9
219,582 + GFF494 0.11 -2.6
219,582 + GFF494 0.11 -1.9
219,583 - GFF494 0.11 -2.3
219,585 + GFF494 0.11 +1.1
219,620 + GFF494 0.13 -2.0
219,770 - GFF494 0.21 -1.7
219,777 - GFF494 0.21 -1.0
219,802 + GFF494 0.22 -1.0
219,802 + GFF494 0.22 +0.0
219,844 + GFF494 0.24 -1.7
219,849 - GFF494 0.24 -2.4
219,890 + GFF494 0.27 -3.1
220,027 + GFF494 0.33 -0.3
220,027 + GFF494 0.33 -0.4
220,028 - GFF494 0.33 -1.8
220,028 - GFF494 0.33 -1.5
220,048 - GFF494 0.34 -1.9
220,113 + GFF494 0.38 -0.6
220,146 + GFF494 0.39 -2.3

Or see this region's nucleotide sequence