Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF469

Experiment: LB_plus_SM_buffer with EIP16_phage 8.75 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF468 and GFF469 are separated by 5 nucleotidesGFF469 and GFF470 are separated by 217 nucleotides GFF468 - Putative fimbrial protein, at 188,981 to 190,060 GFF468 GFF469 - putative fimbrial protein precursor, at 190,066 to 190,593 GFF469 GFF470 - Phosphoethanolamine transferase specific for the outer Kdo residue of lipopolysaccharide, at 190,811 to 192,502 GFF470 Position (kb) 190 191Strain fitness (log2 ratio) -2 -1 0 1 2at 189.074 kb on - strandat 189.094 kb on + strand, within GFF468at 189.094 kb on + strand, within GFF468at 189.095 kb on - strand, within GFF468at 189.095 kb on - strand, within GFF468at 189.111 kb on + strand, within GFF468at 189.112 kb on - strand, within GFF468at 189.112 kb on - strand, within GFF468at 189.115 kb on + strand, within GFF468at 189.195 kb on - strand, within GFF468at 189.195 kb on - strand, within GFF468at 189.223 kb on + strand, within GFF468at 189.300 kb on - strand, within GFF468at 189.316 kb on + strand, within GFF468at 189.319 kb on + strand, within GFF468at 189.365 kb on + strand, within GFF468at 189.365 kb on + strand, within GFF468at 189.366 kb on - strand, within GFF468at 189.390 kb on + strand, within GFF468at 189.436 kb on + strand, within GFF468at 189.450 kb on + strand, within GFF468at 189.478 kb on - strand, within GFF468at 189.478 kb on - strand, within GFF468at 189.514 kb on + strand, within GFF468at 189.519 kb on + strand, within GFF468at 189.520 kb on - strand, within GFF468at 189.535 kb on - strand, within GFF468at 189.567 kb on + strand, within GFF468at 189.567 kb on + strand, within GFF468at 189.577 kb on + strand, within GFF468at 189.577 kb on + strand, within GFF468at 189.579 kb on + strand, within GFF468at 189.579 kb on + strand, within GFF468at 189.580 kb on - strand, within GFF468at 189.580 kb on - strand, within GFF468at 189.595 kb on - strand, within GFF468at 189.597 kb on - strand, within GFF468at 189.598 kb on + strand, within GFF468at 189.598 kb on + strand, within GFF468at 189.598 kb on + strand, within GFF468at 189.599 kb on - strand, within GFF468at 189.599 kb on - strand, within GFF468at 189.599 kb on - strand, within GFF468at 190.045 kb on + strandat 190.046 kb on - strandat 190.059 kb on - strandat 190.164 kb on + strand, within GFF469at 190.174 kb on - strand, within GFF469at 190.176 kb on + strand, within GFF469at 190.209 kb on + strand, within GFF469at 190.209 kb on + strand, within GFF469at 190.439 kb on - strand, within GFF469at 190.492 kb on - strand, within GFF469at 190.508 kb on - strand, within GFF469at 190.509 kb on + strand, within GFF469at 190.519 kb on + strand, within GFF469at 190.520 kb on - strand, within GFF469at 190.586 kb on - strandat 190.698 kb on + strandat 190.702 kb on + strandat 190.703 kb on - strandat 190.724 kb on + strandat 190.724 kb on + strandat 190.725 kb on - strandat 190.725 kb on - strandat 190.744 kb on - strandat 190.748 kb on - strandat 190.748 kb on - strandat 190.748 kb on - strandat 190.865 kb on + strandat 190.866 kb on - strandat 190.916 kb on + strandat 190.917 kb on - strandat 190.996 kb on - strand, within GFF470at 191.079 kb on - strand, within GFF470at 191.181 kb on + strand, within GFF470at 191.181 kb on + strand, within GFF470at 191.182 kb on - strand, within GFF470at 191.230 kb on + strand, within GFF470at 191.244 kb on - strand, within GFF470at 191.244 kb on - strand, within GFF470at 191.244 kb on - strand, within GFF470at 191.262 kb on + strand, within GFF470at 191.262 kb on + strand, within GFF470at 191.263 kb on - strand, within GFF470at 191.266 kb on + strand, within GFF470at 191.397 kb on - strand, within GFF470at 191.420 kb on + strand, within GFF470at 191.457 kb on - strand, within GFF470at 191.525 kb on + strand, within GFF470at 191.526 kb on - strand, within GFF470at 191.555 kb on + strand, within GFF470at 191.555 kb on + strand, within GFF470

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with EIP16_phage 8.75 MOI
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189,074 - +0.1
189,094 + GFF468 0.10 +0.3
189,094 + GFF468 0.10 -0.5
189,095 - GFF468 0.11 -0.0
189,095 - GFF468 0.11 +2.2
189,111 + GFF468 0.12 -0.8
189,112 - GFF468 0.12 -0.0
189,112 - GFF468 0.12 +0.0
189,115 + GFF468 0.12 +1.1
189,195 - GFF468 0.20 -0.4
189,195 - GFF468 0.20 +0.5
189,223 + GFF468 0.22 -0.2
189,300 - GFF468 0.30 +1.0
189,316 + GFF468 0.31 +0.1
189,319 + GFF468 0.31 +0.1
189,365 + GFF468 0.36 +0.2
189,365 + GFF468 0.36 +1.3
189,366 - GFF468 0.36 +0.1
189,390 + GFF468 0.38 +0.3
189,436 + GFF468 0.42 -0.1
189,450 + GFF468 0.43 -0.5
189,478 - GFF468 0.46 -0.1
189,478 - GFF468 0.46 +0.3
189,514 + GFF468 0.49 +0.4
189,519 + GFF468 0.50 +0.7
189,520 - GFF468 0.50 -0.4
189,535 - GFF468 0.51 -1.9
189,567 + GFF468 0.54 -0.4
189,567 + GFF468 0.54 +0.3
189,577 + GFF468 0.55 +0.9
189,577 + GFF468 0.55 +0.3
189,579 + GFF468 0.55 +1.5
189,579 + GFF468 0.55 -0.5
189,580 - GFF468 0.55 -0.7
189,580 - GFF468 0.55 -0.4
189,595 - GFF468 0.57 -0.1
189,597 - GFF468 0.57 -1.5
189,598 + GFF468 0.57 -0.6
189,598 + GFF468 0.57 +1.0
189,598 + GFF468 0.57 +0.5
189,599 - GFF468 0.57 +0.1
189,599 - GFF468 0.57 -0.2
189,599 - GFF468 0.57 -0.4
190,045 + +0.1
190,046 - +0.1
190,059 - +1.4
190,164 + GFF469 0.19 -0.3
190,174 - GFF469 0.20 -0.2
190,176 + GFF469 0.21 -0.3
190,209 + GFF469 0.27 +0.8
190,209 + GFF469 0.27 +0.8
190,439 - GFF469 0.71 +1.6
190,492 - GFF469 0.81 +0.1
190,508 - GFF469 0.84 +0.3
190,509 + GFF469 0.84 +0.1
190,519 + GFF469 0.86 +0.3
190,520 - GFF469 0.86 +0.1
190,586 - -0.1
190,698 + +0.0
190,702 + -0.5
190,703 - +1.3
190,724 + -0.4
190,724 + -0.1
190,725 - -0.2
190,725 - -0.7
190,744 - +0.3
190,748 - +0.6
190,748 - +1.0
190,748 - -0.3
190,865 + +0.0
190,866 - -0.2
190,916 + +0.2
190,917 - +0.2
190,996 - GFF470 0.11 +1.6
191,079 - GFF470 0.16 +0.2
191,181 + GFF470 0.22 +1.6
191,181 + GFF470 0.22 -0.6
191,182 - GFF470 0.22 -0.2
191,230 + GFF470 0.25 -1.2
191,244 - GFF470 0.26 +0.0
191,244 - GFF470 0.26 -1.0
191,244 - GFF470 0.26 -0.4
191,262 + GFF470 0.27 +0.6
191,262 + GFF470 0.27 +0.1
191,263 - GFF470 0.27 +0.9
191,266 + GFF470 0.27 +0.9
191,397 - GFF470 0.35 -0.1
191,420 + GFF470 0.36 +0.5
191,457 - GFF470 0.38 +0.1
191,525 + GFF470 0.42 -2.2
191,526 - GFF470 0.42 +0.4
191,555 + GFF470 0.44 +0.5
191,555 + GFF470 0.44 -0.1

Or see this region's nucleotide sequence