Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4459

Experiment: LB_plus_SM_buffer with EIP16_phage 8.75 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4457 and GFF4458 are separated by 22 nucleotidesGFF4458 and GFF4657 are separated by 62 nucleotidesGFF4657 and GFF4459 are separated by 564 nucleotidesGFF4459 and GFF4460 are separated by 386 nucleotides GFF4457 - Fimbriae W protein, at 242,920 to 243,516 GFF4457 GFF4458 - FIG01046307: hypothetical protein, at 243,539 to 243,709 GFF4458 GFF4657 - tRNA-Arg-TCT, at 243,772 to 243,848 GFF4657 GFF4459 - Mobile element protein, at 244,413 to 244,631 GFF4459 GFF4460 - Putative inner membrane protein, at 245,018 to 246,658 GFF4460 Position (kb) 244 245Strain fitness (log2 ratio) -1 0 1at 243.498 kb on + strandat 243.507 kb on + strandat 243.982 kb on + strandat 243.983 kb on - strandat 244.044 kb on - strandat 244.106 kb on - strandat 244.106 kb on - strandat 244.291 kb on + strandat 244.330 kb on + strandat 244.385 kb on + strandat 244.387 kb on + strandat 244.530 kb on - strand, within GFF4459at 244.530 kb on - strand, within GFF4459at 244.533 kb on - strand, within GFF4459at 244.587 kb on + strand, within GFF4459at 244.646 kb on - strandat 244.869 kb on + strandat 244.870 kb on - strandat 244.951 kb on - strandat 244.956 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with EIP16_phage 8.75 MOI
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243,498 + -1.0
243,507 + +0.2
243,982 + +0.6
243,983 - -0.5
244,044 - -0.7
244,106 - +0.5
244,106 - -0.3
244,291 + -0.3
244,330 + -0.5
244,385 + -0.3
244,387 + -0.3
244,530 - GFF4459 0.53 -0.3
244,530 - GFF4459 0.53 +0.1
244,533 - GFF4459 0.55 -0.8
244,587 + GFF4459 0.79 -0.2
244,646 - +0.6
244,869 + +0.4
244,870 - -1.3
244,951 - -0.2
244,956 - -0.4

Or see this region's nucleotide sequence