Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4455

Experiment: LB_plus_SM_buffer with EIP16_phage 8.75 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4454 and GFF4455 are separated by 603 nucleotidesGFF4455 and GFF4456 are separated by 18 nucleotidesGFF4456 and GFF4457 are separated by 164 nucleotides GFF4454 - Transcriptional regulator of fimbriae expression FimZ (LuxR/UhpA family), at 240,470 to 241,102 GFF4454 GFF4455 - Transcriptional regulator of fimbriae expression FimY, at 241,706 to 242,428 GFF4455 GFF4456 - Putative diguanylate cyclase/phosphodiesterase domain 0, at 242,447 to 242,755 GFF4456 GFF4457 - Fimbriae W protein, at 242,920 to 243,516 GFF4457 Position (kb) 241 242 243Strain fitness (log2 ratio) -1 0 1 2 3at 241.063 kb on + strandat 241.108 kb on + strandat 241.789 kb on + strand, within GFF4455at 242.021 kb on - strand, within GFF4455at 242.088 kb on - strand, within GFF4455at 242.108 kb on - strand, within GFF4455at 242.120 kb on + strand, within GFF4455at 242.131 kb on + strand, within GFF4455at 242.132 kb on - strand, within GFF4455at 242.136 kb on - strand, within GFF4455at 242.226 kb on + strand, within GFF4455at 242.301 kb on + strand, within GFF4455at 242.302 kb on - strand, within GFF4455at 242.454 kb on - strandat 242.477 kb on + strandat 242.581 kb on + strand, within GFF4456at 243.288 kb on + strand, within GFF4457at 243.328 kb on - strand, within GFF4457at 243.398 kb on - strand, within GFF4457at 243.398 kb on - strand, within GFF4457

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with EIP16_phage 8.75 MOI
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241,063 + -0.2
241,108 + -0.2
241,789 + GFF4455 0.11 +0.8
242,021 - GFF4455 0.44 -0.8
242,088 - GFF4455 0.53 +0.2
242,108 - GFF4455 0.56 -0.9
242,120 + GFF4455 0.57 -0.5
242,131 + GFF4455 0.59 +0.5
242,132 - GFF4455 0.59 -0.0
242,136 - GFF4455 0.59 -0.2
242,226 + GFF4455 0.72 +3.3
242,301 + GFF4455 0.82 -0.1
242,302 - GFF4455 0.82 +3.4
242,454 - +3.3
242,477 + +0.7
242,581 + GFF4456 0.43 +0.9
243,288 + GFF4457 0.62 -0.5
243,328 - GFF4457 0.68 +0.4
243,398 - GFF4457 0.80 +0.1
243,398 - GFF4457 0.80 +1.0

Or see this region's nucleotide sequence