Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF440

Experiment: LB_plus_SM_buffer with EIP16_phage 8.75 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF439 and GFF440 are separated by 51 nucleotidesGFF440 and GFF441 are separated by 381 nucleotides GFF439 - Periplasmic alpha-amylase (EC 3.2.1.1), at 160,520 to 162,547 GFF439 GFF440 - hypothetical protein, at 162,599 to 162,733 GFF440 GFF441 - BAX protein, at 163,115 to 163,687 GFF441 Position (kb) 162 163Strain fitness (log2 ratio) -1 0 1 2 3at 161.618 kb on + strand, within GFF439at 161.742 kb on + strand, within GFF439at 161.837 kb on + strand, within GFF439at 161.837 kb on + strand, within GFF439at 161.837 kb on + strand, within GFF439at 161.837 kb on + strand, within GFF439at 161.841 kb on + strand, within GFF439at 161.922 kb on + strand, within GFF439at 161.922 kb on + strand, within GFF439at 161.923 kb on - strand, within GFF439at 161.923 kb on - strand, within GFF439at 161.923 kb on - strand, within GFF439at 161.923 kb on - strand, within GFF439at 161.923 kb on - strand, within GFF439at 161.977 kb on - strand, within GFF439at 162.109 kb on - strand, within GFF439at 162.109 kb on - strand, within GFF439at 162.192 kb on + strand, within GFF439at 162.262 kb on + strand, within GFF439at 162.266 kb on + strand, within GFF439at 162.266 kb on + strand, within GFF439at 162.266 kb on + strand, within GFF439at 162.266 kb on + strand, within GFF439at 162.267 kb on - strand, within GFF439at 162.267 kb on - strand, within GFF439at 162.278 kb on - strand, within GFF439at 162.278 kb on - strand, within GFF439at 162.674 kb on - strand, within GFF440at 162.737 kb on - strandat 162.772 kb on + strandat 162.867 kb on + strandat 162.904 kb on + strandat 162.904 kb on + strandat 162.905 kb on - strandat 162.910 kb on - strandat 162.981 kb on + strandat 162.995 kb on + strandat 163.012 kb on + strandat 163.022 kb on + strandat 163.023 kb on - strandat 163.122 kb on - strandat 163.148 kb on - strandat 163.181 kb on + strand, within GFF441at 163.270 kb on + strand, within GFF441at 163.270 kb on + strand, within GFF441at 163.283 kb on - strand, within GFF441at 163.375 kb on + strand, within GFF441at 163.376 kb on - strand, within GFF441at 163.421 kb on - strand, within GFF441at 163.488 kb on - strand, within GFF441at 163.518 kb on - strand, within GFF441at 163.591 kb on + strand, within GFF441at 163.604 kb on + strand, within GFF441at 163.628 kb on - strand, within GFF441at 163.628 kb on - strand, within GFF441at 163.634 kb on + strandat 163.634 kb on + strandat 163.634 kb on + strandat 163.635 kb on - strandat 163.649 kb on + strandat 163.685 kb on + strandat 163.685 kb on + strandat 163.686 kb on - strandat 163.709 kb on - strandat 163.722 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with EIP16_phage 8.75 MOI
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161,618 + GFF439 0.54 +0.7
161,742 + GFF439 0.60 -0.1
161,837 + GFF439 0.65 -0.4
161,837 + GFF439 0.65 +0.0
161,837 + GFF439 0.65 +0.9
161,837 + GFF439 0.65 +1.3
161,841 + GFF439 0.65 +0.3
161,922 + GFF439 0.69 +0.4
161,922 + GFF439 0.69 +0.7
161,923 - GFF439 0.69 -0.2
161,923 - GFF439 0.69 +1.0
161,923 - GFF439 0.69 -1.5
161,923 - GFF439 0.69 -0.2
161,923 - GFF439 0.69 +1.6
161,977 - GFF439 0.72 -0.4
162,109 - GFF439 0.78 +0.6
162,109 - GFF439 0.78 +0.8
162,192 + GFF439 0.82 +0.4
162,262 + GFF439 0.86 +0.1
162,266 + GFF439 0.86 -0.9
162,266 + GFF439 0.86 +0.1
162,266 + GFF439 0.86 +0.4
162,266 + GFF439 0.86 -0.9
162,267 - GFF439 0.86 -0.0
162,267 - GFF439 0.86 -0.7
162,278 - GFF439 0.87 +0.4
162,278 - GFF439 0.87 -0.2
162,674 - GFF440 0.56 -0.4
162,737 - +0.7
162,772 + -0.6
162,867 + +0.8
162,904 + +0.5
162,904 + +1.3
162,905 - -0.2
162,910 - +0.1
162,981 + +0.8
162,995 + -0.7
163,012 + +3.1
163,022 + +0.0
163,023 - +1.2
163,122 - -0.2
163,148 - -0.4
163,181 + GFF441 0.12 -0.4
163,270 + GFF441 0.27 -1.5
163,270 + GFF441 0.27 -0.0
163,283 - GFF441 0.29 -0.4
163,375 + GFF441 0.45 -0.3
163,376 - GFF441 0.46 +0.3
163,421 - GFF441 0.53 -0.5
163,488 - GFF441 0.65 -0.3
163,518 - GFF441 0.70 +0.6
163,591 + GFF441 0.83 -0.0
163,604 + GFF441 0.85 +0.5
163,628 - GFF441 0.90 +0.0
163,628 - GFF441 0.90 -0.5
163,634 + +0.5
163,634 + +0.1
163,634 + +0.4
163,635 - -0.2
163,649 + -1.2
163,685 + -0.0
163,685 + -0.5
163,686 - -1.0
163,709 - -1.3
163,722 + -0.3

Or see this region's nucleotide sequence