Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF412

Experiment: LB_plus_SM_buffer with EIP16_phage 8.75 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF411 and GFF412 are separated by 298 nucleotidesGFF412 and GFF413 are separated by 43 nucleotides GFF411 - L-lactate permease, at 125,511 to 127,166 GFF411 GFF412 - Peptide transport system permease protein sapB (TC 3.A.1.5.5), at 127,465 to 131,850 GFF412 GFF413 - Putative lipoprotein, at 131,894 to 132,577 GFF413 Position (kb) 127 128 129 130 131 132Strain fitness (log2 ratio) -2 -1 0 1 2at 126.713 kb on + strand, within GFF411at 126.956 kb on - strand, within GFF411at 126.956 kb on - strand, within GFF411at 127.048 kb on + strandat 127.048 kb on + strandat 127.049 kb on - strandat 127.049 kb on - strandat 127.049 kb on - strandat 127.049 kb on - strandat 127.068 kb on - strandat 127.233 kb on - strandat 127.286 kb on - strandat 127.317 kb on - strandat 127.346 kb on + strandat 127.458 kb on + strandat 127.466 kb on + strandat 127.533 kb on + strandat 127.558 kb on + strandat 127.788 kb on - strandat 127.804 kb on - strandat 127.877 kb on + strandat 127.877 kb on + strandat 127.878 kb on - strandat 128.028 kb on + strand, within GFF412at 128.029 kb on - strand, within GFF412at 128.031 kb on + strand, within GFF412at 128.031 kb on + strand, within GFF412at 128.060 kb on - strand, within GFF412at 128.089 kb on - strand, within GFF412at 128.163 kb on - strand, within GFF412at 128.257 kb on - strand, within GFF412at 128.325 kb on + strand, within GFF412at 128.481 kb on + strand, within GFF412at 128.482 kb on - strand, within GFF412at 128.482 kb on - strand, within GFF412at 128.509 kb on - strand, within GFF412at 128.554 kb on - strand, within GFF412at 128.554 kb on - strand, within GFF412at 128.566 kb on - strand, within GFF412at 128.663 kb on + strand, within GFF412at 128.666 kb on + strand, within GFF412at 128.666 kb on + strand, within GFF412at 128.667 kb on - strand, within GFF412at 128.667 kb on - strand, within GFF412at 128.667 kb on - strand, within GFF412at 128.680 kb on - strand, within GFF412at 128.680 kb on - strand, within GFF412at 128.680 kb on - strand, within GFF412at 128.683 kb on - strand, within GFF412at 128.708 kb on - strand, within GFF412at 128.760 kb on + strand, within GFF412at 128.771 kb on + strand, within GFF412at 128.826 kb on + strand, within GFF412at 128.826 kb on + strand, within GFF412at 128.883 kb on + strand, within GFF412at 128.895 kb on + strand, within GFF412at 128.999 kb on - strand, within GFF412at 129.026 kb on + strand, within GFF412at 129.027 kb on - strand, within GFF412at 129.051 kb on + strand, within GFF412at 129.068 kb on + strand, within GFF412at 129.096 kb on + strand, within GFF412at 129.097 kb on - strand, within GFF412at 129.097 kb on - strand, within GFF412at 129.331 kb on - strand, within GFF412at 129.412 kb on - strand, within GFF412at 129.412 kb on - strand, within GFF412at 129.453 kb on + strand, within GFF412at 129.453 kb on + strand, within GFF412at 129.540 kb on + strand, within GFF412at 129.540 kb on + strand, within GFF412at 129.544 kb on - strand, within GFF412at 129.561 kb on + strand, within GFF412at 129.738 kb on + strand, within GFF412at 129.738 kb on + strand, within GFF412at 129.817 kb on - strand, within GFF412at 129.817 kb on - strand, within GFF412at 129.823 kb on - strand, within GFF412at 129.832 kb on - strand, within GFF412at 130.104 kb on + strand, within GFF412at 130.588 kb on - strand, within GFF412at 130.870 kb on - strand, within GFF412at 130.953 kb on + strand, within GFF412at 130.954 kb on - strand, within GFF412at 130.963 kb on + strand, within GFF412at 130.964 kb on - strand, within GFF412at 130.964 kb on - strand, within GFF412at 130.971 kb on + strand, within GFF412at 130.972 kb on - strand, within GFF412at 130.975 kb on + strand, within GFF412at 130.975 kb on + strand, within GFF412at 130.976 kb on - strand, within GFF412at 130.985 kb on + strand, within GFF412at 130.985 kb on + strand, within GFF412at 131.000 kb on - strand, within GFF412at 131.007 kb on - strand, within GFF412at 131.026 kb on - strand, within GFF412at 131.026 kb on - strand, within GFF412at 131.080 kb on + strand, within GFF412at 131.116 kb on - strand, within GFF412at 131.147 kb on + strand, within GFF412at 131.147 kb on + strand, within GFF412at 131.147 kb on + strand, within GFF412at 131.147 kb on + strand, within GFF412at 131.147 kb on + strand, within GFF412at 131.148 kb on - strand, within GFF412at 131.148 kb on - strand, within GFF412at 131.148 kb on - strand, within GFF412at 131.148 kb on - strand, within GFF412at 131.148 kb on - strand, within GFF412at 131.148 kb on - strand, within GFF412at 131.148 kb on - strand, within GFF412at 131.148 kb on - strand, within GFF412at 131.300 kb on + strand, within GFF412at 131.300 kb on + strand, within GFF412at 131.305 kb on + strand, within GFF412at 131.305 kb on + strand, within GFF412at 131.306 kb on - strand, within GFF412at 131.306 kb on - strand, within GFF412at 131.340 kb on + strand, within GFF412at 131.340 kb on + strand, within GFF412at 131.341 kb on - strand, within GFF412at 131.347 kb on + strand, within GFF412at 131.382 kb on - strand, within GFF412at 131.403 kb on - strand, within GFF412at 131.550 kb on + strandat 131.551 kb on - strandat 131.593 kb on - strandat 131.836 kb on - strandat 132.224 kb on - strand, within GFF413at 132.301 kb on + strand, within GFF413at 132.301 kb on + strand, within GFF413

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with EIP16_phage 8.75 MOI
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126,713 + GFF411 0.73 -0.2
126,956 - GFF411 0.87 -0.2
126,956 - GFF411 0.87 -0.3
127,048 + -0.3
127,048 + +0.8
127,049 - +0.7
127,049 - +0.1
127,049 - +0.6
127,049 - -0.0
127,068 - +1.4
127,233 - +0.5
127,286 - +0.0
127,317 - +0.3
127,346 + +1.6
127,458 + -0.0
127,466 + +0.1
127,533 + -0.9
127,558 + -0.1
127,788 - +0.0
127,804 - -0.1
127,877 + +0.7
127,877 + -0.7
127,878 - +0.8
128,028 + GFF412 0.13 +0.4
128,029 - GFF412 0.13 +0.5
128,031 + GFF412 0.13 +0.4
128,031 + GFF412 0.13 -0.0
128,060 - GFF412 0.14 -0.3
128,089 - GFF412 0.14 +0.1
128,163 - GFF412 0.16 +0.1
128,257 - GFF412 0.18 +2.7
128,325 + GFF412 0.20 -2.1
128,481 + GFF412 0.23 +0.3
128,482 - GFF412 0.23 +1.6
128,482 - GFF412 0.23 +2.6
128,509 - GFF412 0.24 +1.0
128,554 - GFF412 0.25 +0.2
128,554 - GFF412 0.25 -0.7
128,566 - GFF412 0.25 +0.1
128,663 + GFF412 0.27 -0.4
128,666 + GFF412 0.27 -1.8
128,666 + GFF412 0.27 +0.4
128,667 - GFF412 0.27 +0.1
128,667 - GFF412 0.27 +0.6
128,667 - GFF412 0.27 -0.3
128,680 - GFF412 0.28 -1.7
128,680 - GFF412 0.28 -1.1
128,680 - GFF412 0.28 -0.0
128,683 - GFF412 0.28 +0.4
128,708 - GFF412 0.28 -0.2
128,760 + GFF412 0.30 -0.2
128,771 + GFF412 0.30 -0.2
128,826 + GFF412 0.31 +0.5
128,826 + GFF412 0.31 -0.5
128,883 + GFF412 0.32 -0.1
128,895 + GFF412 0.33 -0.0
128,999 - GFF412 0.35 -0.9
129,026 + GFF412 0.36 +0.5
129,027 - GFF412 0.36 +0.1
129,051 + GFF412 0.36 -0.0
129,068 + GFF412 0.37 -0.2
129,096 + GFF412 0.37 -0.2
129,097 - GFF412 0.37 -0.1
129,097 - GFF412 0.37 +0.1
129,331 - GFF412 0.43 -0.6
129,412 - GFF412 0.44 -1.3
129,412 - GFF412 0.44 +0.0
129,453 + GFF412 0.45 +0.2
129,453 + GFF412 0.45 +0.1
129,540 + GFF412 0.47 -0.3
129,540 + GFF412 0.47 -0.9
129,544 - GFF412 0.47 -1.1
129,561 + GFF412 0.48 -1.1
129,738 + GFF412 0.52 +1.4
129,738 + GFF412 0.52 +0.2
129,817 - GFF412 0.54 +0.1
129,817 - GFF412 0.54 -1.5
129,823 - GFF412 0.54 +1.1
129,832 - GFF412 0.54 -0.3
130,104 + GFF412 0.60 -0.0
130,588 - GFF412 0.71 -0.5
130,870 - GFF412 0.78 -1.4
130,953 + GFF412 0.80 -0.3
130,954 - GFF412 0.80 -0.1
130,963 + GFF412 0.80 +0.1
130,964 - GFF412 0.80 +0.2
130,964 - GFF412 0.80 -1.0
130,971 + GFF412 0.80 +2.3
130,972 - GFF412 0.80 -1.0
130,975 + GFF412 0.80 +0.2
130,975 + GFF412 0.80 +1.0
130,976 - GFF412 0.80 -1.4
130,985 + GFF412 0.80 -0.5
130,985 + GFF412 0.80 +1.5
131,000 - GFF412 0.81 +1.0
131,007 - GFF412 0.81 +0.1
131,026 - GFF412 0.81 -1.2
131,026 - GFF412 0.81 -0.2
131,080 + GFF412 0.82 -2.0
131,116 - GFF412 0.83 +0.0
131,147 + GFF412 0.84 -0.2
131,147 + GFF412 0.84 -0.2
131,147 + GFF412 0.84 +2.6
131,147 + GFF412 0.84 -0.7
131,147 + GFF412 0.84 +0.0
131,148 - GFF412 0.84 +0.1
131,148 - GFF412 0.84 -0.1
131,148 - GFF412 0.84 +0.6
131,148 - GFF412 0.84 -0.8
131,148 - GFF412 0.84 -1.4
131,148 - GFF412 0.84 +0.1
131,148 - GFF412 0.84 +0.1
131,148 - GFF412 0.84 -0.1
131,300 + GFF412 0.87 -0.1
131,300 + GFF412 0.87 -0.6
131,305 + GFF412 0.88 +0.1
131,305 + GFF412 0.88 +0.4
131,306 - GFF412 0.88 -0.5
131,306 - GFF412 0.88 -0.1
131,340 + GFF412 0.88 -0.6
131,340 + GFF412 0.88 -0.6
131,341 - GFF412 0.88 +0.4
131,347 + GFF412 0.89 -0.8
131,382 - GFF412 0.89 -0.3
131,403 - GFF412 0.90 +0.4
131,550 + +0.7
131,551 - +0.0
131,593 - +0.1
131,836 - +1.5
132,224 - GFF413 0.48 -0.7
132,301 + GFF413 0.60 +0.1
132,301 + GFF413 0.60 +0.5

Or see this region's nucleotide sequence