Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3898

Experiment: LB_plus_SM_buffer with EIP16_phage 8.75 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3897 and GFF3898 are separated by 319 nucleotidesGFF3898 and GFF3899 are separated by 0 nucleotides GFF3897 - Putative glycosyltransferase, at 176,233 to 177,234 GFF3897 GFF3898 - O-antigen flippase Wzx, at 177,554 to 178,615 GFF3898 GFF3899 - O antigen biosynthesis rhamnosyltransferase rfbN (EC 2.4.1.-), at 178,616 to 179,560 GFF3899 Position (kb) 177 178 179Strain fitness (log2 ratio) -2 -1 0 1at 177.665 kb on - strand, within GFF3898at 179.418 kb on + strand, within GFF3899

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with EIP16_phage 8.75 MOI
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177,665 - GFF3898 0.10 -2.2
179,418 + GFF3899 0.85 -0.1

Or see this region's nucleotide sequence