Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3644

Experiment: LB_plus_SM_buffer with EIP16_phage 8.75 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3642 and GFF3643 are separated by 2 nucleotidesGFF3643 and GFF3644 are separated by 3 nucleotides GFF3642 - Electron transport complex protein RnfE, at 391,245 to 391,937 GFF3642 GFF3643 - Electron transport complex protein RnfG, at 391,940 to 392,560 GFF3643 GFF3644 - Electron transport complex protein RnfD, at 392,564 to 393,622 GFF3644 Position (kb) 392 393 394Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 391.776 kb on - strand, within GFF3642at 391.792 kb on - strand, within GFF3642at 392.164 kb on + strand, within GFF3643at 392.165 kb on - strand, within GFF3643at 392.172 kb on - strand, within GFF3643at 392.262 kb on + strand, within GFF3643at 392.371 kb on - strand, within GFF3643at 392.397 kb on + strand, within GFF3643at 392.503 kb on + strandat 392.533 kb on + strandat 392.583 kb on + strandat 392.601 kb on + strandat 392.602 kb on - strandat 392.693 kb on + strand, within GFF3644at 392.992 kb on - strand, within GFF3644at 393.046 kb on + strand, within GFF3644at 393.227 kb on + strand, within GFF3644at 393.227 kb on + strand, within GFF3644at 393.288 kb on - strand, within GFF3644at 393.469 kb on + strand, within GFF3644at 393.593 kb on - strandat 393.595 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with EIP16_phage 8.75 MOI
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391,776 - GFF3642 0.77 -1.5
391,792 - GFF3642 0.79 -2.2
392,164 + GFF3643 0.36 -1.2
392,165 - GFF3643 0.36 -2.4
392,172 - GFF3643 0.37 -4.4
392,262 + GFF3643 0.52 -2.2
392,371 - GFF3643 0.69 -0.5
392,397 + GFF3643 0.74 -1.7
392,503 + -1.7
392,533 + -1.2
392,583 + +0.2
392,601 + +0.0
392,602 - +1.5
392,693 + GFF3644 0.12 -1.9
392,992 - GFF3644 0.40 -1.0
393,046 + GFF3644 0.46 -0.6
393,227 + GFF3644 0.63 -1.9
393,227 + GFF3644 0.63 -0.4
393,288 - GFF3644 0.68 -1.9
393,469 + GFF3644 0.85 -0.4
393,593 - -1.0
393,595 - +0.0

Or see this region's nucleotide sequence