Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3265

Experiment: LB_plus_SM_buffer with EIP16_phage 8.75 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3263 and GFF3264 are separated by 122 nucleotidesGFF3264 and GFF3645 are separated by 119 nucleotidesGFF3645 and GFF3265 are separated by 138 nucleotidesGFF3265 and GFF3266 are separated by 398 nucleotides GFF3263 - Putative TEGT family carrier/transport protein, at 36,134 to 36,793 GFF3263 GFF3264 - hypothetical protein, at 36,916 to 37,068 GFF3264 GFF3645 - tRNA-Ser-TGA, at 37,188 to 37,275 GFF3645 GFF3265 - Pathogenicity island encoded protein: SPI3, at 37,414 to 37,917 GFF3265 GFF3266 - FIG01046201: hypothetical protein, at 38,316 to 39,191 GFF3266 Position (kb) 37 38Strain fitness (log2 ratio) -1 0 1 2 3at 36.532 kb on - strand, within GFF3263at 36.532 kb on - strand, within GFF3263at 36.532 kb on - strand, within GFF3263at 36.615 kb on + strand, within GFF3263at 36.616 kb on - strand, within GFF3263at 37.048 kb on - strand, within GFF3264at 37.339 kb on - strandat 37.356 kb on + strandat 37.415 kb on + strandat 37.419 kb on + strandat 37.482 kb on + strand, within GFF3265at 37.482 kb on + strand, within GFF3265at 37.483 kb on - strand, within GFF3265at 37.546 kb on + strand, within GFF3265at 37.698 kb on + strand, within GFF3265at 37.819 kb on + strand, within GFF3265at 38.039 kb on - strandat 38.385 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with EIP16_phage 8.75 MOI
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36,532 - GFF3263 0.60 +1.5
36,532 - GFF3263 0.60 +0.3
36,532 - GFF3263 0.60 +0.7
36,615 + GFF3263 0.73 -0.3
36,616 - GFF3263 0.73 +0.1
37,048 - GFF3264 0.86 -0.6
37,339 - -0.6
37,356 + -1.2
37,415 + +0.2
37,419 + +1.2
37,482 + GFF3265 0.13 +0.8
37,482 + GFF3265 0.13 +0.3
37,483 - GFF3265 0.14 +3.2
37,546 + GFF3265 0.26 +0.7
37,698 + GFF3265 0.56 -0.3
37,819 + GFF3265 0.80 -0.7
38,039 - -0.1
38,385 - -0.3

Or see this region's nucleotide sequence