Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2563

Experiment: LB_plus_SM_buffer with EIP16_phage 8.75 MOI

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF2562 and GFF2563 are separated by 524 nucleotidesGFF2563 and GFF2564 are separated by 83 nucleotidesGFF2564 and GFF2565 are separated by 24 nucleotides GFF2562 - Permease of the drug/metabolite transporter (DMT) superfamily, at 79,441 to 80,265 GFF2562 GFF2563 - Outer membrane porin protein NmpC precursor, at 80,790 to 81,878 GFF2563 GFF2564 - Gfa-like protein, at 81,962 to 82,402 GFF2564 GFF2565 - Methyl viologen resistance protein smvA, at 82,427 to 83,914 GFF2565 Position (kb) 80 81 82Strain fitness (log2 ratio) -1 0 1 2 3 4at 79.827 kb on + strand, within GFF2562at 79.884 kb on + strand, within GFF2562at 79.919 kb on - strand, within GFF2562at 79.979 kb on + strand, within GFF2562at 80.013 kb on - strand, within GFF2562at 80.093 kb on + strand, within GFF2562at 80.113 kb on - strand, within GFF2562at 80.263 kb on + strandat 80.291 kb on - strandat 80.325 kb on + strandat 80.715 kb on + strandat 80.862 kb on + strandat 80.864 kb on + strandat 80.864 kb on + strandat 80.864 kb on + strandat 80.865 kb on - strandat 80.972 kb on + strand, within GFF2563at 81.126 kb on + strand, within GFF2563at 81.233 kb on + strand, within GFF2563at 81.376 kb on - strand, within GFF2563at 81.429 kb on - strand, within GFF2563at 81.669 kb on + strand, within GFF2563at 81.751 kb on - strand, within GFF2563at 81.956 kb on + strandat 82.085 kb on + strand, within GFF2564at 82.086 kb on - strand, within GFF2564at 82.139 kb on + strand, within GFF2564at 82.210 kb on + strand, within GFF2564at 82.232 kb on - strand, within GFF2564at 82.423 kb on + strandat 82.551 kb on - strandat 82.579 kb on + strand, within GFF2565at 82.728 kb on + strand, within GFF2565

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with EIP16_phage 8.75 MOI
remove
79,827 + GFF2562 0.47 -0.6
79,884 + GFF2562 0.54 +0.4
79,919 - GFF2562 0.58 -1.2
79,979 + GFF2562 0.65 -0.1
80,013 - GFF2562 0.69 -0.2
80,093 + GFF2562 0.79 -0.6
80,113 - GFF2562 0.81 -0.2
80,263 + -0.3
80,291 - -0.1
80,325 + +2.4
80,715 + +0.4
80,862 + -0.7
80,864 + +0.1
80,864 + +0.1
80,864 + +0.3
80,865 - +0.1
80,972 + GFF2563 0.17 +0.0
81,126 + GFF2563 0.31 -0.2
81,233 + GFF2563 0.41 +0.6
81,376 - GFF2563 0.54 +0.9
81,429 - GFF2563 0.59 -0.7
81,669 + GFF2563 0.81 -0.0
81,751 - GFF2563 0.88 +0.4
81,956 + +1.2
82,085 + GFF2564 0.28 -0.1
82,086 - GFF2564 0.28 -1.4
82,139 + GFF2564 0.40 +1.7
82,210 + GFF2564 0.56 +3.8
82,232 - GFF2564 0.61 +0.1
82,423 + -0.2
82,551 - -0.3
82,579 + GFF2565 0.10 -0.0
82,728 + GFF2565 0.20 +0.1

Or see this region's nucleotide sequence