Experiment: LB_plus_SM_buffer with EIP16_phage 8.75 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1094 and GFF1095 are separated by 16 nucleotides GFF1095 and GFF1096 are separated by 380 nucleotides GFF1096 and GFF1097 are separated by 91 nucleotides
GFF1094 - FIG01045823: hypothetical protein, at 277,277 to 277,810
GFF1094
GFF1095 - Putative membrane protein, at 277,827 to 278,270
GFF1095
GFF1096 - Chitinase (EC 3.2.1.14), at 278,651 to 280,750
GFF1096
GFF1097 - Putative hydroxymethyltransferase, at 280,842 to 283,838
GFF1097
Position (kb) 278
279
280
281 Strain fitness (log2 ratio) -1
0
1 at 277.864 kb on - strand at 278.055 kb on + strand, within GFF1095 at 278.783 kb on - strand at 278.866 kb on + strand, within GFF1096 at 279.068 kb on + strand, within GFF1096 at 279.069 kb on - strand, within GFF1096 at 279.070 kb on + strand, within GFF1096 at 279.071 kb on - strand, within GFF1096 at 279.130 kb on + strand, within GFF1096 at 279.131 kb on - strand, within GFF1096 at 279.401 kb on - strand, within GFF1096 at 279.516 kb on + strand, within GFF1096 at 279.563 kb on + strand, within GFF1096 at 279.717 kb on - strand, within GFF1096 at 279.793 kb on + strand, within GFF1096 at 279.831 kb on - strand, within GFF1096 at 279.842 kb on + strand, within GFF1096 at 279.843 kb on - strand, within GFF1096 at 279.920 kb on + strand, within GFF1096 at 279.921 kb on - strand, within GFF1096 at 279.951 kb on + strand, within GFF1096 at 279.970 kb on + strand, within GFF1096 at 279.971 kb on - strand, within GFF1096 at 279.992 kb on + strand, within GFF1096 at 280.135 kb on - strand, within GFF1096 at 280.228 kb on - strand, within GFF1096 at 280.237 kb on + strand, within GFF1096 at 280.237 kb on + strand, within GFF1096 at 280.276 kb on + strand, within GFF1096 at 280.294 kb on + strand, within GFF1096 at 280.538 kb on - strand, within GFF1096 at 280.558 kb on + strand at 280.684 kb on + strand at 280.748 kb on + strand at 280.751 kb on + strand at 280.752 kb on - strand at 280.752 kb on - strand at 280.761 kb on + strand at 280.762 kb on - strand at 280.995 kb on - strand at 281.095 kb on + strand at 281.321 kb on + strand, within GFF1097 at 281.596 kb on + strand, within GFF1097 at 281.604 kb on + strand, within GFF1097
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with EIP16_phage 8.75 MOI remove 277,864 - +1.3 278,055 + GFF1095 0.51 -1.1 278,783 - -0.3 278,866 + GFF1096 0.10 -1.1 279,068 + GFF1096 0.20 -1.4 279,069 - GFF1096 0.20 +0.5 279,070 + GFF1096 0.20 -0.3 279,071 - GFF1096 0.20 +0.3 279,130 + GFF1096 0.23 +0.0 279,131 - GFF1096 0.23 -0.5 279,401 - GFF1096 0.36 -0.4 279,516 + GFF1096 0.41 +0.5 279,563 + GFF1096 0.43 +1.4 279,717 - GFF1096 0.51 -0.5 279,793 + GFF1096 0.54 -0.2 279,831 - GFF1096 0.56 -0.0 279,842 + GFF1096 0.57 +0.4 279,843 - GFF1096 0.57 -1.4 279,920 + GFF1096 0.60 +0.2 279,921 - GFF1096 0.60 -0.0 279,951 + GFF1096 0.62 -1.4 279,970 + GFF1096 0.63 -0.3 279,971 - GFF1096 0.63 -0.1 279,992 + GFF1096 0.64 +0.1 280,135 - GFF1096 0.71 +0.5 280,228 - GFF1096 0.75 -0.3 280,237 + GFF1096 0.76 -0.8 280,237 + GFF1096 0.76 +0.8 280,276 + GFF1096 0.77 +0.1 280,294 + GFF1096 0.78 -0.5 280,538 - GFF1096 0.90 +1.3 280,558 + +0.4 280,684 + +0.2 280,748 + +0.3 280,751 + -0.3 280,752 - -0.3 280,752 - -0.1 280,761 + -0.3 280,762 - -0.8 280,995 - -0.3 281,095 + -0.3 281,321 + GFF1097 0.16 -0.1 281,596 + GFF1097 0.25 -0.4 281,604 + GFF1097 0.25 +1.2
Or see this region's nucleotide sequence