Experiment: marine_broth_2216 with Chloride 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_21415 and CA264_21420 are separated by 107 nucleotides CA264_21420 and CA264_21425 are separated by 112 nucleotides CA264_21425 and CA264_21430 are separated by 375 nucleotides
CA264_21415: CA264_21415 - IS256 family transposase, at 147,224 to 148,429
_21415
CA264_21420: CA264_21420 - hypothetical protein, at 148,537 to 148,746
_21420
CA264_21425: CA264_21425 - copper-translocating P-type ATPase, at 148,859 to 151,126
_21425
CA264_21430: CA264_21430 - DDE transposase, at 151,502 to 152,329
_21430
Position (kb) 148
149
150
151
152 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 147.948 kb on + strand, within CA264_21415 at 147.948 kb on + strand, within CA264_21415 at 148.045 kb on - strand, within CA264_21415 at 148.193 kb on + strand, within CA264_21415 at 148.229 kb on - strand, within CA264_21415 at 148.229 kb on - strand, within CA264_21415 at 148.341 kb on + strand at 148.341 kb on + strand at 148.342 kb on - strand at 148.342 kb on - strand at 148.501 kb on - strand at 148.505 kb on - strand at 148.508 kb on + strand at 148.542 kb on + strand at 148.554 kb on + strand at 148.571 kb on - strand, within CA264_21420 at 148.678 kb on - strand, within CA264_21420 at 148.691 kb on - strand, within CA264_21420 at 148.760 kb on + strand at 148.760 kb on + strand at 148.769 kb on + strand at 148.773 kb on + strand at 148.774 kb on - strand at 148.774 kb on - strand at 148.807 kb on - strand at 148.883 kb on + strand at 148.895 kb on - strand at 148.899 kb on - strand at 148.959 kb on + strand at 148.960 kb on - strand at 148.993 kb on + strand at 148.993 kb on + strand at 148.997 kb on + strand at 148.998 kb on - strand at 149.007 kb on + strand at 149.008 kb on - strand at 149.061 kb on - strand at 149.074 kb on + strand at 149.129 kb on + strand, within CA264_21425 at 149.129 kb on + strand, within CA264_21425 at 149.130 kb on - strand, within CA264_21425 at 149.130 kb on - strand, within CA264_21425 at 149.153 kb on + strand, within CA264_21425 at 149.154 kb on - strand, within CA264_21425 at 149.154 kb on - strand, within CA264_21425 at 149.154 kb on - strand, within CA264_21425 at 149.159 kb on + strand, within CA264_21425 at 149.159 kb on + strand, within CA264_21425 at 149.159 kb on + strand, within CA264_21425 at 149.160 kb on - strand, within CA264_21425 at 149.160 kb on - strand, within CA264_21425 at 149.213 kb on + strand, within CA264_21425 at 149.213 kb on + strand, within CA264_21425 at 149.216 kb on + strand, within CA264_21425 at 149.216 kb on + strand, within CA264_21425 at 149.217 kb on - strand, within CA264_21425 at 149.257 kb on + strand, within CA264_21425 at 149.281 kb on + strand, within CA264_21425 at 149.284 kb on - strand, within CA264_21425 at 149.291 kb on + strand, within CA264_21425 at 149.298 kb on - strand, within CA264_21425 at 149.349 kb on + strand, within CA264_21425 at 149.350 kb on - strand, within CA264_21425 at 149.350 kb on - strand, within CA264_21425 at 149.350 kb on - strand, within CA264_21425 at 149.359 kb on + strand, within CA264_21425 at 149.359 kb on + strand, within CA264_21425 at 149.360 kb on - strand, within CA264_21425 at 149.360 kb on - strand, within CA264_21425 at 149.424 kb on - strand, within CA264_21425 at 149.426 kb on + strand, within CA264_21425 at 149.432 kb on + strand, within CA264_21425 at 149.433 kb on - strand, within CA264_21425 at 149.440 kb on + strand, within CA264_21425 at 149.461 kb on + strand, within CA264_21425 at 149.522 kb on + strand, within CA264_21425 at 149.522 kb on + strand, within CA264_21425 at 149.523 kb on - strand, within CA264_21425 at 149.523 kb on - strand, within CA264_21425 at 149.538 kb on - strand, within CA264_21425 at 149.545 kb on + strand, within CA264_21425 at 149.545 kb on + strand, within CA264_21425 at 149.546 kb on - strand, within CA264_21425 at 149.551 kb on + strand, within CA264_21425 at 149.603 kb on + strand, within CA264_21425 at 149.604 kb on - strand, within CA264_21425 at 149.604 kb on - strand, within CA264_21425 at 149.636 kb on + strand, within CA264_21425 at 149.712 kb on - strand, within CA264_21425 at 149.712 kb on - strand, within CA264_21425 at 149.712 kb on - strand, within CA264_21425 at 149.760 kb on - strand, within CA264_21425 at 149.813 kb on - strand, within CA264_21425 at 149.828 kb on - strand, within CA264_21425 at 149.858 kb on - strand, within CA264_21425 at 149.858 kb on - strand, within CA264_21425 at 149.952 kb on - strand, within CA264_21425 at 150.207 kb on + strand, within CA264_21425 at 150.208 kb on - strand, within CA264_21425 at 150.208 kb on - strand, within CA264_21425 at 150.269 kb on + strand, within CA264_21425 at 150.270 kb on - strand, within CA264_21425 at 150.270 kb on - strand, within CA264_21425 at 150.273 kb on + strand, within CA264_21425 at 150.273 kb on + strand, within CA264_21425 at 150.519 kb on + strand, within CA264_21425 at 150.519 kb on + strand, within CA264_21425 at 150.520 kb on - strand, within CA264_21425 at 150.520 kb on - strand, within CA264_21425 at 150.572 kb on - strand, within CA264_21425 at 150.602 kb on - strand, within CA264_21425 at 150.611 kb on + strand, within CA264_21425 at 150.685 kb on - strand, within CA264_21425 at 150.776 kb on - strand, within CA264_21425 at 150.934 kb on + strand at 150.934 kb on + strand at 150.935 kb on - strand at 150.935 kb on - strand at 150.936 kb on + strand at 150.936 kb on + strand at 151.001 kb on + strand at 151.043 kb on - strand at 151.048 kb on + strand at 151.081 kb on + strand at 151.099 kb on + strand at 151.100 kb on - strand at 151.112 kb on + strand at 151.112 kb on + strand at 151.113 kb on - strand at 151.117 kb on + strand at 151.186 kb on + strand at 151.190 kb on - strand at 151.227 kb on - strand at 151.227 kb on - strand at 151.236 kb on + strand at 151.243 kb on + strand at 151.244 kb on - strand at 151.258 kb on + strand at 151.309 kb on + strand at 151.323 kb on + strand at 151.323 kb on + strand at 151.324 kb on - strand at 151.324 kb on - strand at 151.328 kb on - strand at 151.332 kb on + strand at 151.375 kb on + strand at 151.388 kb on - strand at 151.409 kb on + strand at 151.409 kb on + strand at 151.415 kb on - strand at 151.434 kb on + strand at 151.495 kb on + strand at 151.527 kb on + strand at 151.527 kb on + strand at 151.528 kb on - strand at 151.528 kb on - strand at 151.528 kb on - strand at 151.532 kb on - strand at 151.600 kb on - strand, within CA264_21430 at 151.603 kb on - strand, within CA264_21430 at 151.616 kb on + strand, within CA264_21430 at 151.617 kb on - strand, within CA264_21430 at 151.618 kb on + strand, within CA264_21430 at 151.618 kb on + strand, within CA264_21430 at 151.618 kb on + strand, within CA264_21430 at 151.619 kb on - strand, within CA264_21430 at 151.619 kb on - strand, within CA264_21430 at 151.619 kb on - strand, within CA264_21430 at 151.624 kb on + strand, within CA264_21430 at 151.624 kb on + strand, within CA264_21430 at 151.624 kb on + strand, within CA264_21430 at 151.700 kb on + strand, within CA264_21430 at 151.701 kb on - strand, within CA264_21430 at 151.704 kb on - strand, within CA264_21430 at 151.783 kb on + strand, within CA264_21430 at 151.798 kb on - strand, within CA264_21430 at 151.811 kb on - strand, within CA264_21430 at 151.909 kb on + strand, within CA264_21430 at 152.094 kb on + strand, within CA264_21430
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 with Chloride 500 mM remove 147,948 + CA264_21415 0.60 -1.0 147,948 + CA264_21415 0.60 -0.9 148,045 - CA264_21415 0.68 -1.2 148,193 + CA264_21415 0.80 +0.3 148,229 - CA264_21415 0.83 +0.4 148,229 - CA264_21415 0.83 -0.7 148,341 + -0.5 148,341 + -0.2 148,342 - +0.4 148,342 - -0.2 148,501 - -0.4 148,505 - +0.4 148,508 + +0.8 148,542 + +1.0 148,554 + +2.1 148,571 - CA264_21420 0.16 +0.1 148,678 - CA264_21420 0.67 +0.2 148,691 - CA264_21420 0.73 +1.6 148,760 + -0.2 148,760 + +0.4 148,769 + +0.4 148,773 + -0.7 148,774 - -1.1 148,774 - -0.6 148,807 - +0.5 148,883 + +0.4 148,895 - +0.4 148,899 - -1.0 148,959 + -0.3 148,960 - -0.2 148,993 + +0.3 148,993 + -1.6 148,997 + +0.8 148,998 - +0.8 149,007 + -0.2 149,008 - +0.8 149,061 - -0.1 149,074 + +0.3 149,129 + CA264_21425 0.12 -0.2 149,129 + CA264_21425 0.12 +0.6 149,130 - CA264_21425 0.12 +0.2 149,130 - CA264_21425 0.12 -0.9 149,153 + CA264_21425 0.13 -0.4 149,154 - CA264_21425 0.13 +1.2 149,154 - CA264_21425 0.13 -0.6 149,154 - CA264_21425 0.13 -0.0 149,159 + CA264_21425 0.13 -0.4 149,159 + CA264_21425 0.13 +0.0 149,159 + CA264_21425 0.13 -0.5 149,160 - CA264_21425 0.13 -0.7 149,160 - CA264_21425 0.13 +1.6 149,213 + CA264_21425 0.16 +0.5 149,213 + CA264_21425 0.16 -0.3 149,216 + CA264_21425 0.16 +1.8 149,216 + CA264_21425 0.16 -0.5 149,217 - CA264_21425 0.16 +0.2 149,257 + CA264_21425 0.18 +0.0 149,281 + CA264_21425 0.19 -0.2 149,284 - CA264_21425 0.19 +0.8 149,291 + CA264_21425 0.19 -0.8 149,298 - CA264_21425 0.19 +0.4 149,349 + CA264_21425 0.22 +0.5 149,350 - CA264_21425 0.22 -0.0 149,350 - CA264_21425 0.22 +2.6 149,350 - CA264_21425 0.22 +2.2 149,359 + CA264_21425 0.22 +1.8 149,359 + CA264_21425 0.22 +0.2 149,360 - CA264_21425 0.22 +0.0 149,360 - CA264_21425 0.22 -0.7 149,424 - CA264_21425 0.25 +0.0 149,426 + CA264_21425 0.25 +0.2 149,432 + CA264_21425 0.25 -0.1 149,433 - CA264_21425 0.25 +0.2 149,440 + CA264_21425 0.26 -1.2 149,461 + CA264_21425 0.27 -0.2 149,522 + CA264_21425 0.29 -0.0 149,522 + CA264_21425 0.29 -0.4 149,523 - CA264_21425 0.29 +0.8 149,523 - CA264_21425 0.29 -0.3 149,538 - CA264_21425 0.30 -0.2 149,545 + CA264_21425 0.30 -0.9 149,545 + CA264_21425 0.30 -0.6 149,546 - CA264_21425 0.30 -0.7 149,551 + CA264_21425 0.31 -1.3 149,603 + CA264_21425 0.33 +0.4 149,604 - CA264_21425 0.33 -0.2 149,604 - CA264_21425 0.33 +0.3 149,636 + CA264_21425 0.34 -0.3 149,712 - CA264_21425 0.38 +3.2 149,712 - CA264_21425 0.38 -1.7 149,712 - CA264_21425 0.38 -1.0 149,760 - CA264_21425 0.40 +0.8 149,813 - CA264_21425 0.42 -1.0 149,828 - CA264_21425 0.43 +0.1 149,858 - CA264_21425 0.44 +0.0 149,858 - CA264_21425 0.44 -0.5 149,952 - CA264_21425 0.48 +0.3 150,207 + CA264_21425 0.59 +3.2 150,208 - CA264_21425 0.59 +1.0 150,208 - CA264_21425 0.59 +0.8 150,269 + CA264_21425 0.62 -0.6 150,270 - CA264_21425 0.62 -0.2 150,270 - CA264_21425 0.62 +0.5 150,273 + CA264_21425 0.62 +0.2 150,273 + CA264_21425 0.62 +0.4 150,519 + CA264_21425 0.73 +0.1 150,519 + CA264_21425 0.73 +0.3 150,520 - CA264_21425 0.73 -0.7 150,520 - CA264_21425 0.73 -0.5 150,572 - CA264_21425 0.76 +0.4 150,602 - CA264_21425 0.77 -0.2 150,611 + CA264_21425 0.77 -0.1 150,685 - CA264_21425 0.81 -0.2 150,776 - CA264_21425 0.85 +0.0 150,934 + +0.8 150,934 + -2.1 150,935 - -0.2 150,935 - +0.1 150,936 + -0.4 150,936 + +1.8 151,001 + +0.8 151,043 - -0.4 151,048 + -0.1 151,081 + +1.1 151,099 + -0.1 151,100 - -0.1 151,112 + -0.2 151,112 + -0.7 151,113 - -0.1 151,117 + +0.6 151,186 + -0.2 151,190 - +0.8 151,227 - -0.1 151,227 - +0.4 151,236 + +2.1 151,243 + -2.5 151,244 - -0.3 151,258 + +0.2 151,309 + -1.7 151,323 + -0.4 151,323 + +0.3 151,324 - -1.3 151,324 - -1.2 151,328 - +0.0 151,332 + -1.2 151,375 + -0.3 151,388 - +0.8 151,409 + -0.7 151,409 + +0.5 151,415 - -1.0 151,434 + -1.0 151,495 + -0.2 151,527 + -0.6 151,527 + -1.3 151,528 - -0.7 151,528 - -0.5 151,528 - -0.2 151,532 - -0.1 151,600 - CA264_21430 0.12 -0.4 151,603 - CA264_21430 0.12 -0.2 151,616 + CA264_21430 0.14 +0.9 151,617 - CA264_21430 0.14 -0.0 151,618 + CA264_21430 0.14 +0.0 151,618 + CA264_21430 0.14 -0.0 151,618 + CA264_21430 0.14 +2.2 151,619 - CA264_21430 0.14 +0.5 151,619 - CA264_21430 0.14 -0.7 151,619 - CA264_21430 0.14 +0.8 151,624 + CA264_21430 0.15 -0.2 151,624 + CA264_21430 0.15 +0.0 151,624 + CA264_21430 0.15 -0.2 151,700 + CA264_21430 0.24 +0.5 151,701 - CA264_21430 0.24 +0.6 151,704 - CA264_21430 0.24 +0.3 151,783 + CA264_21430 0.34 -0.4 151,798 - CA264_21430 0.36 +0.4 151,811 - CA264_21430 0.37 +2.0 151,909 + CA264_21430 0.49 -1.6 152,094 + CA264_21430 0.71 -0.2
Or see this region's nucleotide sequence