Experiment: marine_broth_2216 with Chloride 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_21300 and CA264_21305 are separated by 130 nucleotides CA264_21305 and CA264_21310 are separated by 190 nucleotides CA264_21310 and CA264_21315 are separated by 82 nucleotides CA264_21315 and CA264_21320 are separated by 194 nucleotides
CA264_21300: CA264_21300 - hypothetical protein, at 124,869 to 125,432
_21300
CA264_21305: CA264_21305 - hypothetical protein, at 125,563 to 125,895
_21305
CA264_21310: CA264_21310 - hypothetical protein, at 126,086 to 126,292
_21310
CA264_21315: CA264_21315 - four-helix bundle copper-binding protein, at 126,375 to 126,734
_21315
CA264_21320: CA264_21320 - hypothetical protein, at 126,929 to 127,609
_21320
Position (kb) 126
127 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 125.386 kb on - strand at 125.493 kb on + strand at 125.493 kb on + strand at 125.497 kb on - strand at 125.499 kb on - strand at 125.501 kb on + strand at 125.502 kb on - strand at 125.502 kb on - strand at 125.502 kb on - strand at 125.656 kb on - strand, within CA264_21305 at 125.716 kb on - strand, within CA264_21305 at 125.754 kb on + strand, within CA264_21305 at 125.794 kb on - strand, within CA264_21305 at 125.884 kb on - strand at 125.894 kb on - strand at 126.021 kb on - strand at 126.044 kb on - strand at 126.218 kb on + strand, within CA264_21310 at 126.219 kb on - strand, within CA264_21310 at 126.339 kb on - strand at 126.374 kb on + strand at 126.375 kb on - strand at 126.455 kb on - strand, within CA264_21315 at 126.534 kb on - strand, within CA264_21315 at 126.535 kb on + strand, within CA264_21315 at 126.535 kb on + strand, within CA264_21315 at 126.536 kb on - strand, within CA264_21315 at 126.615 kb on - strand, within CA264_21315 at 126.615 kb on - strand, within CA264_21315 at 126.615 kb on - strand, within CA264_21315 at 126.647 kb on - strand, within CA264_21315 at 126.733 kb on - strand at 126.834 kb on + strand at 126.834 kb on + strand at 126.835 kb on - strand at 126.874 kb on - strand at 126.899 kb on + strand at 126.946 kb on + strand at 127.075 kb on + strand, within CA264_21320 at 127.080 kb on + strand, within CA264_21320 at 127.094 kb on - strand, within CA264_21320 at 127.197 kb on + strand, within CA264_21320 at 127.198 kb on - strand, within CA264_21320 at 127.205 kb on + strand, within CA264_21320 at 127.206 kb on - strand, within CA264_21320 at 127.206 kb on - strand, within CA264_21320 at 127.293 kb on + strand, within CA264_21320 at 127.376 kb on - strand, within CA264_21320 at 127.376 kb on - strand, within CA264_21320 at 127.376 kb on - strand, within CA264_21320 at 127.420 kb on + strand, within CA264_21320 at 127.421 kb on - strand, within CA264_21320 at 127.446 kb on + strand, within CA264_21320 at 127.542 kb on + strand at 127.632 kb on + strand at 127.633 kb on - strand at 127.633 kb on - strand at 127.633 kb on - strand at 127.655 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 with Chloride 500 mM remove 125,386 - -0.7 125,493 + +0.5 125,493 + +1.8 125,497 - +1.0 125,499 - -2.0 125,501 + +3.4 125,502 - +1.8 125,502 - +0.4 125,502 - -0.9 125,656 - CA264_21305 0.28 +0.1 125,716 - CA264_21305 0.46 -1.0 125,754 + CA264_21305 0.57 -0.7 125,794 - CA264_21305 0.69 +0.5 125,884 - -0.7 125,894 - +0.1 126,021 - +1.0 126,044 - +1.4 126,218 + CA264_21310 0.64 -0.7 126,219 - CA264_21310 0.64 -0.0 126,339 - -0.9 126,374 + -0.2 126,375 - -0.9 126,455 - CA264_21315 0.22 -0.7 126,534 - CA264_21315 0.44 -1.1 126,535 + CA264_21315 0.44 -0.9 126,535 + CA264_21315 0.44 +0.8 126,536 - CA264_21315 0.45 -0.4 126,615 - CA264_21315 0.67 -1.8 126,615 - CA264_21315 0.67 -1.2 126,615 - CA264_21315 0.67 -0.7 126,647 - CA264_21315 0.76 -0.2 126,733 - -1.3 126,834 + -2.6 126,834 + -1.3 126,835 - +0.6 126,874 - -0.7 126,899 + +0.2 126,946 + -1.1 127,075 + CA264_21320 0.21 -0.7 127,080 + CA264_21320 0.22 -0.7 127,094 - CA264_21320 0.24 +2.6 127,197 + CA264_21320 0.39 -0.2 127,198 - CA264_21320 0.40 -0.2 127,205 + CA264_21320 0.41 -1.5 127,206 - CA264_21320 0.41 +0.8 127,206 - CA264_21320 0.41 -0.4 127,293 + CA264_21320 0.53 -1.2 127,376 - CA264_21320 0.66 +0.3 127,376 - CA264_21320 0.66 -2.3 127,376 - CA264_21320 0.66 +0.0 127,420 + CA264_21320 0.72 -1.2 127,421 - CA264_21320 0.72 -0.4 127,446 + CA264_21320 0.76 -0.6 127,542 + -2.2 127,632 + -0.7 127,633 - -0.7 127,633 - -0.2 127,633 - +0.8 127,655 - +0.8
Or see this region's nucleotide sequence